Browse Element(s) Details


OsAffx.23764.1.S1_at

Description tigr:9629.m05089
TID=OsAffx.23764.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5244011/11hypothetical protein
LOC_Os01g524301/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52400Os.52362.1.S1_at11/111+30429832..30434188acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase containing protein, expressed
LOC_Os01g52410OsAffx.2312.1.S1_at11/111+30444067..30445393Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g52420OsAffx.2313.1.S1_at11/111+30446858..30447088hypothetical protein
LOC_Os01g52430Os.40626.2.S1_x_at6/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430Os.40626.1.S1_at5/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430OsAffx.23764.1.S1_at1/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52440OsAffx.23764.1.S1_at11/111+30457211..30457732hypothetical protein
LOC_Os01g52450Os.41826.1.S1_x_at10/111+30458236..30462095Hexokinase 2, putative, expressed
LOC_Os01g52460Os.23127.1.S1_s_at11/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52460OsAffx.7779.1.S1_at6/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52470Os.32865.1.S1_at11/111+30470494..30473674Elongation factor 2, putative, expressed
LOC_Os01g52480Os.50867.1.S1_at11/111+30482512..30484489senescence/dehydration-associated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23764.1.S1_at--1146--10631Chr01:30457268..30457292 (25 bp)
TTCCCGGACGCACGGCACCTGGAGA
LOC_Os01g52440
OsAffx.23764.1.S1_at--1132--8712Chr01:30457323..30457347 (25 bp)
TGTCGTGCATGTTCGCCGGTGGCCT
LOC_Os01g52440
OsAffx.23764.1.S1_at--1052--8691Chr01:30457425..30457449 (25 bp)
TGTGCGACACCTACCTGTCGCTGAC
LOC_Os01g52440
OsAffx.23764.1.S1_at--790--8711Chr01:30457440..30457464 (25 bp)
TGTCGCTGACCATGGTGATCCGCTT
LOC_Os01g52440
OsAffx.23764.1.S1_at--268--8851Chr01:30457455..30457479 (25 bp)
TGATCCGCTTCTACACGCTCATGTA
LOC_Os01g52440
OsAffx.23764.1.S1_at--800--5771Chr01:30457505..30457529 (25 bp)
GACGAGTACCTCTTCATGTTCGGTC
LOC_Os01g52440
OsAffx.23764.1.S1_at--677--731Chr01:30457520..30457544 (25 bp)
ATGTTCGGTCTCTGCGCTGTCGGTG
LOC_Os01g52440
OsAffx.23764.1.S1_at--259--7531Chr01:30457542..30457566 (25 bp)
GTGGCGCTGCTATCGTGACGACGTC
LOC_Os01g52440
OsAffx.23764.1.S1_at--63--511Chr01:30457553..30457577 (25 bp)
ATCGTGACGACGTCTTTCGTCCTGG
LOC_Os01g52440
OsAffx.23764.1.S1_at--1130--7911Chr01:30457578..30457602 (25 bp)
GGATTCCCGTCGAAGACGAGCGTGT
LOC_Os01g52440
OsAffx.23764.1.S1_at--702--1931Chr01:30457656..30457680 (25 bp)
ACTGGGCGTGGCTCGTTCGCAAGTA
LOC_Os01g52440
Target Sequence 
TTCCCGGACGCACGGCACCTGGAGACGCCGAAGTGGATAGCGGCGCTGCTCCTCGTGTCGTGCATGTTCGCCGGTGGCCT
CTACACCCTGACGCCCCTCATAGCCAAGGACCCTCTCTACCTCGCCCGCGTCCCGTGGCGGCTGCCGGTGCGCGTCCTGT
GCGACACCTACCTGTCGCTGACCATGGTGATCCGCTTCTACACGCTCATGTACCTGCCCCGCGCGCCGCTGGTCGCCGAC
GAGTACCTCTTCATGTTCGGTCTCTGCGCTGTCGGTGGCGCTGCTATCGTGACGACGTCTTTCGTCCTGGGGATTCCCGT
CGAAGACGAGCGTGTGGTGATGGCGTGTGCCGGCGTCCTCGCCGTCCTCGTCGCCGGGCTGCTCGCGTACTGGGCGTGGC
TCGTTCGCAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis