Browse Element(s) Details


Os.41826.1.S1_x_at

Description gb:BE530915
DB_XREF= gi:9788905
DB_XREF=OC03B07
CLONE=Rice Microarray ID1276
TID=Os.41826.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hexokinase (P0690B02.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5245010/11Hexokinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52400Os.52362.1.S1_at11/111+30429832..30434188acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase containing protein, expressed
LOC_Os01g52410OsAffx.2312.1.S1_at11/111+30444067..30445393Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g52420OsAffx.2313.1.S1_at11/111+30446858..30447088hypothetical protein
LOC_Os01g52430Os.40626.2.S1_x_at6/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430Os.40626.1.S1_at5/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430OsAffx.23764.1.S1_at1/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52440OsAffx.23764.1.S1_at11/111+30457211..30457732hypothetical protein
LOC_Os01g52450Os.41826.1.S1_x_at10/111+30458236..30462095Hexokinase 2, putative, expressed
LOC_Os01g52460Os.23127.1.S1_s_at11/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52460OsAffx.7779.1.S1_at6/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52470Os.32865.1.S1_at11/111+30470494..30473674Elongation factor 2, putative, expressed
LOC_Os01g52480Os.50867.1.S1_at11/111+30482512..30484489senescence/dehydration-associated protein, putative, expressed
LOC_Os01g52490Os.12357.1.S1_at11/111+30484794..3048662140S ribosomal protein S24, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009747biological_processhexokinase-dependent signaling
GO:0010182biological_processsugar mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0004396molecular_functionhexokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41826.1.S1_x_at--500--10691Chr01:30461491..30461515 (25 bp)
TTGCGACACGCGGTGCACGGCTTGC
LOC_Os01g52450
Os.41826.1.S1_x_at--1121--10851Chr01:30461548..30461572 (25 bp)
TTGGTCAGCATTCTGACAGCCCCAG
LOC_Os01g52450
Os.41826.1.S1_x_at--538--2151Chr01:30461563..30461587 (25 bp)
ACAGCCCCAGTACGAGAAGGTCCGT
LOC_Os01g52450
Os.41826.1.S1_x_at--467--7691Chr01:30461605..30461629 (25 bp)
GGGTCTATAAATACTACACTTTCTT
LOC_Os01g52450
Os.41826.1.S1_x_at--632--2171Chr01:30461620..30461644 (25 bp)
ACACTTTCTTCAGCCAGTGCATGGA
LOC_Os01g52450
Os.41826.1.S1_x_at--759--5091Chr01:30461647..30461671 (25 bp)
GCACTCTGAGTGACATGCTTGGGCA
LOC_Os01g52450
Os.41826.1.S1_x_at--439--4191Chr01:30461681..30461705 (25 bp)
CCCCTCTGTTATGATCAAGCATGTC
LOC_Os01g52450
Os.41826.1.S1_x_at--960--4991Chr01:30461699..30461723 (25 bp)
GCATGTCAATGATGGCTCAGGCGTT
LOC_Os01g52450
Os.41826.1.S1_x_at--489--10411Chr01:30461747..30461771 (25 bp)
TTATTCTCAATACCACCAGGCTGAA
LOC_Os01g52450
Os.41826.1.S1_x_at--362--9971Chr01:30461757..30461781 (25 bp)
TACCACCAGGCTGAATCTGCAGATA
LOC_Os01g52450
Os.41826.1.S1_x_at--695--10691NONE
TTGCCTATGGGCTAAATATCTTGTA
NONE
Target Sequence 
TTGCGACACGCGGTGCACGGCTTGCTGCTGCTGGGATATATGGCATTATCCAAAAGCTTGGTCAGCATTCTGACAGCCCC
AGTACGAGAAGGTCCGTGATTGCTGTGGATGGAGGGGTCTATAAATACTACACTTTCTTCAGCCAGTGCATGGAGAGCAC
TCTGAGTGACATGCTTGGGCAGGAGCTGGCCCCCTCTGTTATGATCAAGCATGTCAATGATGGCTCAGGCGTTGGGGCAG
CTCTCCTGGCAGCCTNTTATTCTCAATACCACCAGGCTGAATCTGCAGATAGTTCATAANTATTNCTAAAAAAAAGAAGC
TGAATCTGCNGATAGCTCTTAATATTCTGAAAAAANCTGTCAAAAAATAATATTNTGAAAAAAAACTGNGTATTAANGNG
ATAAACAATAGGNTTTTGGANCNAATTTTTTTTTNNNAANANAGNGGATTAAANCCGGNCCTNTACATCCNAAACGNGNA
TTCTAGANGCAATAGNCAGCTNTACAGTTTGCCTATGGGCTAAATATCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41826.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis