Browse Element(s) Details


Os.12357.1.S1_at

Description gb:AK063794.1
DB_XREF= gi:32973812
TID=Os.12357.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.12357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 40S ribosomal protein S24 (P0690B02.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-F01, full insert sequence.
FL= gb:AK063794.1 gb:AK122140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5249011/1140S ribosomal protein S24, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52450Os.41826.1.S1_x_at10/111+30458236..30462095Hexokinase 2, putative, expressed
LOC_Os01g52460Os.23127.1.S1_s_at11/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52460OsAffx.7779.1.S1_at6/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52470Os.32865.1.S1_at11/111+30470494..30473674Elongation factor 2, putative, expressed
LOC_Os01g52480Os.50867.1.S1_at11/111+30482512..30484489senescence/dehydration-associated protein, putative, expressed
LOC_Os01g52490Os.12357.1.S1_at11/111+30484794..3048662140S ribosomal protein S24, putative, expressed
LOC_Os01g52500Os.421.1.S1_a_at11/111+30492864..30498505NADP-dependent malic enzyme, putative, expressed
LOC_Os01g52514OsAffx.11575.1.S1_at11/111+30500289..30505892B3 DNA binding domain containing protein, expressed
LOC_Os01g52530Os.29866.1.S1_at11/111+30507453..30511324Ribose-phosphate pyrophosphokinase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12357.1.S1_at--613--3471Chr01:30485276..30485297 (22 bp)
CAGGAATGGTCTTGCTACCAAGGTT
LOC_Os01g52490
Os.12357.1.S1_at--1078--9051Chr01:30485264..30485288 (25 bp)
TGCTACCAAGGTTGAGAAATCTCGC
LOC_Os01g52490
Os.12357.1.S1_at--27--1711Chr01:30485092..30485116 (25 bp)
ACCAAGGCTGGTGATGCCGGGAAAA
LOC_Os01g52490
Os.12357.1.S1_at--210--7371Chr01:30485063..30485087 (25 bp)
GTGAAAACTCATTTACATTTGTACT
LOC_Os01g52490
Os.12357.1.S1_at--271--3571Chr01:30485048..30485072 (25 bp)
CATTTGTACTACTGGCTCTGGGAAC
LOC_Os01g52490
Os.12357.1.S1_at--103--8331Chr01:30485035..30485059 (25 bp)
GGCTCTGGGAACACTGTTGGGTCTA
LOC_Os01g52490
Os.12357.1.S1_at--876--5491Chr01:30485027..30485051 (25 bp)
GAACACTGTTGGGTCTAGTGGCAAT
LOC_Os01g52490
Os.12357.1.S1_at--305--8231Chr01:30485008..30485032 (25 bp)
GGCAATGGCGTAATCATGTTTCTGT
LOC_Os01g52490
Os.12357.1.S1_at--833--10371Chr01:30484970..30484994 (25 bp)
TTTTCCCTCGTCACTGAAGTCAAGT
LOC_Os01g52490
Os.12357.1.S1_at--532--10831Chr01:30484944..30484968 (25 bp)
TTGTGATTGTGGATGGAACTTAGCT
LOC_Os01g52490
Os.12357.1.S1_at--869--5471Chr01:30484929..30484953 (25 bp)
GAACTTAGCTAGTTTGGCTATAGCA
LOC_Os01g52490
Target Sequence 
CAGGAATGGTCTTGCTACCAAGGTTGAGAAATCTCGCAAGCAAATGAAAGAACGCAAGAACAGAGCTAAGAAGATCCGTG
GTGTCAAGAAGACCAAGGCTGGTGATGCCGGGAAAAAGAAGTGAAAACTCATTTACATTTGTACTACTGGCTCTGGGAAC
ACTGTTGGGTCTAGTGGCAATGGCGTAATCATGTTTCTGTTAGTTTTTTGTTGTTTTCCCTCGTCACTGAAGTCAAGTTT
TGTGATTGTGGATGGAACTTAGCTAGTTTGGCTATAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis