Browse Element(s) Details


Os.421.1.S1_a_at

Description gb:AB053295.1
DB_XREF= gi:12082336
GEN=NADP-ME2
TID=Os.421.1
CNT=61
FEA=FLmRNA
TIER=FL+Stack
STK=27
UG=Os.421 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) NADP-ME2 mRNA for NADP dependent malic enzyme, complete cds.
PROD=NADP dependent malic enzyme
FL= gb:AK068110.1 gb:AB053295.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5250011/11NADP-dependent malic enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52460Os.23127.1.S1_s_at11/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52460OsAffx.7779.1.S1_at6/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52470Os.32865.1.S1_at11/111+30470494..30473674Elongation factor 2, putative, expressed
LOC_Os01g52480Os.50867.1.S1_at11/111+30482512..30484489senescence/dehydration-associated protein, putative, expressed
LOC_Os01g52490Os.12357.1.S1_at11/111+30484794..3048662140S ribosomal protein S24, putative, expressed
LOC_Os01g52500Os.421.1.S1_a_at11/111+30492864..30498505NADP-dependent malic enzyme, putative, expressed
LOC_Os01g52514OsAffx.11575.1.S1_at11/111+30500289..30505892B3 DNA binding domain containing protein, expressed
LOC_Os01g52530Os.29866.1.S1_at11/111+30507453..30511324Ribose-phosphate pyrophosphokinase 3, putative, expressed
LOC_Os01g52540OsAffx.2315.1.S1_at11/111+30513231..30516017B3 DNA binding domain containing protein
LOC_Os01g52550Os.27564.1.S1_a_at11/111+30516231..30522187P-glycoprotein homologue, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006108biological_processmalate metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004470molecular_functionmalic enzyme activity
GO:0004473molecular_functionmalate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
GO:0016652molecular_functionoxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.421.1.S1_a_at--19--8731Chr01:30497502..30497526 (25 bp)
TGTCTGGTGCAATCCGTGTTCATGA
LOC_Os01g52500
Os.421.1.S1_a_at--560--8191Chr01:30497873..30497897 (25 bp)
GGAAGCACTGGCTCAGCAGGTCACA
LOC_Os01g52500
Os.421.1.S1_a_at--1137--1331Chr01:30497900..30497924 (25 bp)
AGAGAATTTCGACAAGGGCCTTACT
LOC_Os01g52500
Os.421.1.S1_a_at--1044--1411Chr01:30497946..30497970 (25 bp)
AGAAAGATCTCTGCCCACATTGCAG
LOC_Os01g52500
Os.421.1.S1_a_at--90--8971Chr01:30498177..30498201 (25 bp)
TGAATCTGGTCATCCGGTATCCGGA
LOC_Os01g52500
Os.421.1.S1_a_at--325--7851Chr01:30498192..30498216 (25 bp)
GGTATCCGGATCTATTCCAGTCATG
LOC_Os01g52500
Os.421.1.S1_a_at--103--2071Chr01:30498251..30498275 (25 bp)
ACTTGTTCAGTACTGCACGCTGTAA
LOC_Os01g52500
Os.421.1.S1_a_at--235--111Chr01:30498275..30498299 (25 bp)
ATTCTGATGAGTCTACCGGAGTTAC
LOC_Os01g52500
Os.421.1.S1_a_at--1009--3991Chr01:30498318..30498342 (25 bp)
CGTGTCGTTCATGCCTGTATTGTAA
LOC_Os01g52500
Os.421.1.S1_a_at--130--7071Chr01:30498339..30498363 (25 bp)
GTAATATTTCCTTTTCGACGTGATG
LOC_Os01g52500
Os.421.1.S1_a_at--264--5311Chr01:30498365..30498389 (25 bp)
GAAGTTCCTTGTATCCAGTTACCTT
LOC_Os01g52500
Target Sequence 
TGTCTGGTGCAATCCGTGTTCATGATGACATGCTTCTTGCAGCTTCGGAAGCACTGGCTCAGCAGGTCACACAAGAGAAT
TTCGACAAGGGCCTTACTTATCCTCCCTTCTCAAACATCAGAAAGATCTCTGCCCACATTGCAGCCAACGTTGCAGCAAA
GGCATATGAACTTGGTTTGGCAAGCAGGCGCCCTCGGCCAAAGGACCTGGTTAAGTATGCAGAGAGCTGCATGTACAGCC
CACTTTACCGCAACTACCGGTGAATCTGGTCATCCGGTATCCGGATCTATTCCAGTCATGTATATCTATGAACTGTTTCC
TGCAAAATCTTACTACTTGTTCAGTACTGCACGCTGTAATTCTGATGAGTCTACCGGAGTTACTTCAAGCCCTTTTTTTC
CCCGTGTCGTTCATGCCTGTATTGTAATATTTCCTTTTCGACGTGATGTGAAGTTCCTTGTATCCAGTTACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.421.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis