Browse Element(s) Details


Os.27564.1.S1_a_at

Description gb:AK067006.1
DB_XREF= gi:32977024
TID=Os.27564.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative P-glycoprotein (P0022F10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093O09, full insert sequence.
FL= gb:AK067006.1 gb:AK061902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5255011/11P-glycoprotein homologue, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52500Os.421.1.S1_a_at11/111+30492864..30498505NADP-dependent malic enzyme, putative, expressed
LOC_Os01g52514OsAffx.11575.1.S1_at11/111+30500289..30505892B3 DNA binding domain containing protein, expressed
LOC_Os01g52530Os.29866.1.S1_at11/111+30507453..30511324Ribose-phosphate pyrophosphokinase 3, putative, expressed
LOC_Os01g52540OsAffx.2315.1.S1_at11/111+30513231..30516017B3 DNA binding domain containing protein
LOC_Os01g52550Os.27564.1.S1_a_at11/111+30516231..30522187P-glycoprotein homologue, putative, expressed
LOC_Os01g52560Os.35398.2.S1_x_at11/111+30540714..30549822ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27564.1.S1_a_at--688--1371Chr01:30516884..30516908 (25 bp)
AGACGAGATCGTGGAAGCTGCTAAA
LOC_Os01g52550
Os.27564.1.S1_a_at--289--1971Chr01:30516713..30516737 (25 bp)
ACTGACTGTGGTGAGCATGGATTAC
LOC_Os01g52550
Os.27564.1.S1_a_at--503--6111Chr01:30516651..30516675 (25 bp)
GAGGGCAATAATCCGGAATCCAGCA
LOC_Os01g52550
Os.27564.1.S1_a_at--1007--2851Chr01:30516603..30516627 (25 bp)
AAGTGCTCTCGATGCACAGTCAGAG
LOC_Os01g52550
Os.27564.1.S1_a_at--777--1352Chr05:27628195..27628669 (25 bp)
AGAGCAAGTTGTGCAGGAAGCCCTT
NONE
Os.27564.1.S1_a_at--93--8191Chr01:30516567..30516591 (25 bp)
GGAAGCCCTTGATAGAATCATGTCA
LOC_Os01g52550
Os.27564.1.S1_a_at--548--7491Chr01:30516527..30516551 (25 bp)
GTGGTGGCACATCGACTGAACACAA
LOC_Os01g52550
Os.27564.1.S1_a_at--272--6951Chr01:30516494..30516518 (25 bp)
GTAGATTCGATTGCCTTCTTAGGAG
LOC_Os01g52550
Os.27564.1.S1_a_at--975--8571Chr01:30516450..30516474 (25 bp)
TGGTACTTATCCACACCTCATGAGT
LOC_Os01g52550
Os.27564.1.S1_a_at--835--971Chr01:30516420..30516444 (25 bp)
AGGAGCATTCTACAACCTAGCGGCT
LOC_Os01g52550
Os.27564.1.S1_a_at--684--2211Chr01:30516409..30516433 (25 bp)
ACAACCTAGCGGCTCTTCAGAAATA
LOC_Os01g52550
Target Sequence 
AGACGAGATCGTGGAAGCTGCTAAAGCTGCAAATGCACATGAATTCATATCATCTCTAAAGGACGGATATCATACTGACT
GTGGTGAGCATGGATTACAACTATCAGGAGGGCAAAAGCAACGAATTGCAATTGCGAGGGCAATAATCCGGAATCCAGCA
ATACTTCTACTTGACGAAGCAACAAGTGCTCTCGATGCACAGTCAGAGCAAGTTGTGCAGGAAGCCCTTGATAGAATCAT
GTCAGGAAGGACTACAATTGTGGTGGCACATCGACTGAACACAATCAAGAATGTAGATTCGATTGCCTTCTTAGGAGAGG
GTAAGGTAGTGGAACGTGGTACTTATCCACACCTCATGAGTAAGAAAGGAGCATTCTACAACCTAGCGGCTCTTCAGAAA
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27564.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis