Browse Element(s) Details


Os.35398.2.S1_x_at

Description gb:NM_191830.1
DB_XREF= gi:34910743
GEN=P0022F10.18
TID=Os.35398.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35398 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ABC transporter (P0022F10.18), mRNA.
PROD=putative ABC transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5256011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52540OsAffx.2315.1.S1_at11/111+30513231..30516017B3 DNA binding domain containing protein
LOC_Os01g52550Os.27564.1.S1_a_at11/111+30516231..30522187P-glycoprotein homologue, putative, expressed
LOC_Os01g52560Os.35398.2.S1_x_at11/111+30540714..30549822ABC transporter family protein, putative, expressed
LOC_Os01g52570OsAffx.2316.1.S1_at11/111+30552686..30553354Lachrymatory-factor synthase precursor, putative, expressed
LOC_Os01g52579OsAffx.23765.1.S1_at2/111+30554956..30555830NA
LOC_Os01g52590OsAffx.23765.1.S1_at7/111+30556825..30557265hypothetical protein
LOC_Os01g52600NANA1+30564807..30567609hypothetical protein
LOC_Os01g52610Os.33816.1.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610Os.33816.2.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.12648.1.S1_at2/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.18402.1.S1_at1/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35398.2.S1_x_at--257--7011Chr01:30549004..30549028 (25 bp)
GTACTCGGCTATACCATATGCTCTA
LOC_Os01g52560
Os.35398.2.S1_x_at--1142--251Chr01:30549019..30549219 (25 bp)
ATATGCTCTAGCTCAGGTTGTTGTG
LOC_Os01g52560
Os.35398.2.S1_x_at--853--6471Chr01:30549222..30549246 (25 bp)
GATACCGTATGTGTTCGTTGAGACT
LOC_Os01g52560
Os.35398.2.S1_x_at--353--8871Chr01:30549362..30549386 (25 bp)
TGATGAACGTCTCCGTATCACCAAA
LOC_Os01g52560
Os.35398.2.S1_x_at--271--2631Chr01:30549385..30549409 (25 bp)
AACCTTCAGGTTGCTTCCATATTGG
LOC_Os01g52560
Os.35398.2.S1_x_at--471--9231Chr01:30549400..30549424 (25 bp)
TCCATATTGGGTGCTGCCTTTTACA
LOC_Os01g52560
Os.35398.2.S1_x_at--1103--10431Chr01:30549420..30549444 (25 bp)
TTACACCCTTTTCAATCTCTTTTCA
LOC_Os01g52560
Os.35398.2.S1_x_at--935--7011Chr01:30549576..30549600 (25 bp)
GTACTATTGGCTTTGTCCAGTGGCA
LOC_Os01g52560
Os.35398.2.S1_x_at--725--6891Chr01:30549607..30549631 (25 bp)
GTATACGGCCTTATTGTGTCACAGT
LOC_Os01g52560
Os.35398.2.S1_x_at--465--6151Chr01:30549643..30549667 (25 bp)
GAGGATTTTATCACGGTCCCTGGAC
LOC_Os01g52560
Os.35398.2.S1_x_at--39--2031Chr01:30549701..30549725 (25 bp)
ACTATTTTGGCTATGACCCGGACTT
LOC_Os01g52560
Target Sequence 
GTACTCGGCTATACCATATGCTCTAGCTCAGGTTGTTGTGGAGATACCGTATGTGTTCGTTGAGACTGTCATTTACACAC
TTATTGTCTACCCAATGATGTCGTTCCAATGGACACCAGCAAAATTCTTCTGGTTCTTCTATGTTTCATTCTTCACCTTC
CTCTATTTCACTTACTATGGCATGATGAACGTCTCCGTATCACCAAACCTTCAGGTTGCTTCCATATTGGGTGCTGCCTT
TTACACCCTTTTCAATCTCTTTTCAGGATTCTTCATCCCAAGACCGAAAATCCCAAAATGGTGGGTTTGGTACTATTGGC
TTTGTCCAGTGGCATGGACAGTATACGGCCTTATTGTGTCACAGTACGGAGATGTGGAGGATTTTATCACGGTCCCTGGA
CAATCTGATCAGCAAGTCAGACCTTTCATCAAGGACTATTTTGGCTATGACCCGGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35398.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis