Browse Element(s) Details


OsAffx.11575.1.S1_at

Description gb:NM_191825.1
DB_XREF= gi:34910733
GEN=P0022F10.13
TID=OsAffx.11575.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0022F10.13 (P0022F10.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5251411/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52480Os.50867.1.S1_at11/111+30482512..30484489senescence/dehydration-associated protein, putative, expressed
LOC_Os01g52490Os.12357.1.S1_at11/111+30484794..3048662140S ribosomal protein S24, putative, expressed
LOC_Os01g52500Os.421.1.S1_a_at11/111+30492864..30498505NADP-dependent malic enzyme, putative, expressed
LOC_Os01g52514OsAffx.11575.1.S1_at11/111+30500289..30505892B3 DNA binding domain containing protein, expressed
LOC_Os01g52530Os.29866.1.S1_at11/111+30507453..30511324Ribose-phosphate pyrophosphokinase 3, putative, expressed
LOC_Os01g52540OsAffx.2315.1.S1_at11/111+30513231..30516017B3 DNA binding domain containing protein
LOC_Os01g52550Os.27564.1.S1_a_at11/111+30516231..30522187P-glycoprotein homologue, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11575.1.S1_at--94--2771Chr01:30505266..30505290 (25 bp)
AAGACGCGGAGCCTCCAGGACGACC
LOC_Os01g52514
OsAffx.11575.1.S1_at--886--3811Chr01:30505421..30505445 (25 bp)
CTGCGTCATCCGCATGAGCACCATG
LOC_Os01g52514
OsAffx.11575.1.S1_at--810--691Chr01:30505434..30505458 (25 bp)
ATGAGCACCATGCACGTCTACTACT
LOC_Os01g52514
OsAffx.11575.1.S1_at--782--1891Chr01:30505447..30505469 (23 bp)
ACGTCTACTACTCCTTCATGATGAG
LOC_Os01g52514
OsAffx.11575.1.S1_at--742--2891Chr01:30505671..30505695 (25 bp)
AAGGTGTGGTCGGTGCTGTACATCC
LOC_Os01g52514
OsAffx.11575.1.S1_at--141--7791Chr01:30505682..30505706 (25 bp)
GGTGCTGTACATCCCGAACACGCGG
LOC_Os01g52514
OsAffx.11575.1.S1_at--987--4551Chr01:30505737..30505761 (25 bp)
GCGCGCGGGAACTGCCTCGAGGAAG
LOC_Os01g52514
OsAffx.11575.1.S1_at--609--3791Chr01:30505752..30505776 (25 bp)
CTCGAGGAAGGCGACTACTGCGTGT
LOC_Os01g52514
OsAffx.11575.1.S1_at--268--5711Chr01:30505764..30505788 (25 bp)
GACTACTGCGTGTTCGAGCTCGTCG
LOC_Os01g52514
OsAffx.11575.1.S1_at--613--6051Chr01:30505797..30505821 (25 bp)
GAGTTCCGGGTCCACATCTTCCGGG
LOC_Os01g52514
OsAffx.11575.1.S1_at--1056--2071Chr01:30505810..30505834 (25 bp)
ACATCTTCCGGGTGGTCGAGCCGGC
LOC_Os01g52514
Target Sequence 
AAGACGCGGAGCCTCCAGGACGACCTGGCCCTCGCCAGCATCCCGCCGTCCATCCGGCGCTACAAGGGGTACGTGTCCCG
CCGCCGCGCCGTCGCCACCGCCGAGCGGCAGCGCGCCACGGAGATCGCCCACGCGTTCCGGTCCCCGCTCCCCTACTGCG
TCATCCGCATGAGCACCATGCACGTCTACTACTCCTTCATGATGAGGTTTCCGACGGGGTTCTCGAGGCAGCACCTGCCG
CGGGAGAGGACGGACGTGGTGCTGCGAGACCCGGGGGGGAAGGTGTGGTCGGTGCTGTACATCCCGAACACGCGGGACCG
GCTGTCGCGCGGGTGGTGCGCGTTCGCGCGCGGGAACTGCCTCGAGGAAGGCGACTACTGCGTGTTCGAGCTCGTCGCCG
CGGCCGAGTTCCGGGTCCACATCTTCCGGGTGGTCGAGCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis