Browse Element(s) Details


Os.29866.1.S1_at

Description gb:AK109735.1
DB_XREF= gi:32994944
TID=Os.29866.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.29866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphoribosyl pyrophosphate synthase (P0022F10.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C08, full insert sequence.
FL= gb:AK109735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5253011/11Ribose-phosphate pyrophosphokinase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52480Os.50867.1.S1_at11/111+30482512..30484489senescence/dehydration-associated protein, putative, expressed
LOC_Os01g52490Os.12357.1.S1_at11/111+30484794..3048662140S ribosomal protein S24, putative, expressed
LOC_Os01g52500Os.421.1.S1_a_at11/111+30492864..30498505NADP-dependent malic enzyme, putative, expressed
LOC_Os01g52514OsAffx.11575.1.S1_at11/111+30500289..30505892B3 DNA binding domain containing protein, expressed
LOC_Os01g52530Os.29866.1.S1_at11/111+30507453..30511324Ribose-phosphate pyrophosphokinase 3, putative, expressed
LOC_Os01g52540OsAffx.2315.1.S1_at11/111+30513231..30516017B3 DNA binding domain containing protein
LOC_Os01g52550Os.27564.1.S1_a_at11/111+30516231..30522187P-glycoprotein homologue, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009165biological_processnucleotide biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0004749molecular_functionribose phosphate diphosphokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29866.1.S1_at--47--6231Chr01:30509532..30509556 (25 bp)
GAGGCCGCCATGTTGTTATAGTTGA
LOC_Os01g52530
Os.29866.1.S1_at--1021--311Chr01:30509793..30509817 (25 bp)
ATACGTGACACATGGCATTTTCCCC
LOC_Os01g52530
Os.29866.1.S1_at--640--7111Chr01:30510920..30510944 (25 bp)
GTCATGGGCTAAGCCACTTCTGGAT
LOC_Os01g52530
Os.29866.1.S1_at--776--8572Chr01:30510940..30510964 (25 bp)
TGGATTACTGATTCATGCCCTCTCA
LOC_Os01g52530
Os.29866.1.S1_at--716--5651Chr01:30510982..30511006 (25 bp)
GACAGGCAGCCGTTTGAAATTCTCA
LOC_Os01g52530
Os.29866.1.S1_at--922--5591Chr01:30510997..30511021 (25 bp)
GAAATTCTCAGTCTGGCAGGACCTA
LOC_Os01g52530
Os.29866.1.S1_at--935--2031Chr01:30511052..30511076 (25 bp)
ACTATGTTTGCTTGGCCAACCGGGA
LOC_Os01g52530
Os.29866.1.S1_at--1062--6511Chr01:30511075..30511099 (25 bp)
GATATTGTTTAGTTCATTCTTCCCC
LOC_Os01g52530
Os.29866.1.S1_at--812--3311Chr01:30511100..30511124 (25 bp)
CACATTTTCAGGCTCTTGGATTTTT
LOC_Os01g52530
Os.29866.1.S1_at--365--7091Chr01:30511247..30511271 (25 bp)
GTCAACGAGTCGAGCTATGTTCTAT
LOC_Os01g52530
Os.29866.1.S1_at--1090--2551Chr01:30511278..30511302 (25 bp)
AACTGTCCAATAAACTTTCTGCTGA
LOC_Os01g52530
Target Sequence 
GAGGCCGCCATGTTGTTATAGTTGATGACTTGGTACAGTCAGGTGGTACATTGATTGAATGCCAGAAAGTATTGGCAGAG
CATGGAGCAGCAAAGGTTAGTGCATACGTGACACATGGCATTTTCCCCAACAAGTCGTGGGAGAAATTTCAGCCTGATAA
TGGAGAGGGTCCGGGTCATGGGCTAAGCCACTTCTGGATTACTGATTCATGCCCTCTCACTGTCAATGCGGTCAAGGACA
GGCAGCCGTTTGAAATTCTCAGTCTGGCAGGACCTATTGCTTCTGCTCTTCAGATTTAGCAAATTCACTATGTTTGCTTG
GCCAACCGGGATATTGTTTAGTTCATTCTTCCCCCACATTTTCAGGCTCTTGGATTTTTTTCTCTTTCTAGAAAGGATAT
GTTCTTAATGTTTATTGAAACCTCAGGNGAAAATTCCATGAATTGGTTAAACGGCAAGGATATTCATAGGATAGTTTGCT
TAATAATCTGACTGAAAAGAAGTCAACGAGTCGAGCTATGTTCTATAAATAAAACTGTCCAATAAACTTTCTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis