Browse Element(s) Details


OsAffx.2313.1.S1_at

Description tigr:9629.m05087
TID=OsAffx.2313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5242011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52390Os.11159.1.S1_at11/111+30422267..30425641retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52400Os.52362.1.S1_at11/111+30429832..30434188acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase containing protein, expressed
LOC_Os01g52410OsAffx.2312.1.S1_at11/111+30444067..30445393Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g52420OsAffx.2313.1.S1_at11/111+30446858..30447088hypothetical protein
LOC_Os01g52430Os.40626.2.S1_x_at6/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430Os.40626.1.S1_at5/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430OsAffx.23764.1.S1_at1/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52440OsAffx.23764.1.S1_at11/111+30457211..30457732hypothetical protein
LOC_Os01g52450Os.41826.1.S1_x_at10/111+30458236..30462095Hexokinase 2, putative, expressed
LOC_Os01g52460Os.23127.1.S1_s_at11/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52460OsAffx.7779.1.S1_at6/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52470Os.32865.1.S1_at11/111+30470494..30473674Elongation factor 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2313.1.S1_at--757--8931Chr01:30446914..30446938 (25 bp)
TGACGTCCCAGCCAAGCTCTGGGCT
LOC_Os01g52420
OsAffx.2313.1.S1_at--1116--7231Chr01:30446918..30446942 (25 bp)
GTCCCAGCCAAGCTCTGGGCTAGAG
LOC_Os01g52420
OsAffx.2313.1.S1_at--900--4351Chr01:30446921..30446945 (25 bp)
CCAGCCAAGCTCTGGGCTAGAGGTG
LOC_Os01g52420
OsAffx.2313.1.S1_at--206--3251Chr01:30446926..30446950 (25 bp)
CAAGCTCTGGGCTAGAGGTGCCAAT
LOC_Os01g52420
OsAffx.2313.1.S1_at--1045--4791Chr01:30446929..30446953 (25 bp)
GCTCTGGGCTAGAGGTGCCAATGCC
LOC_Os01g52420
OsAffx.2313.1.S1_at--1003--4851Chr01:30446936..30446960 (25 bp)
GCTAGAGGTGCCAATGCCCCGTTCC
LOC_Os01g52420
OsAffx.2313.1.S1_at--127--3371Chr01:30447010..30447034 (25 bp)
CACCTCCTGCAGTGTCTTCTGCGAG
LOC_Os01g52420
OsAffx.2313.1.S1_at--652--9271Chr01:30447014..30447038 (25 bp)
TCCTGCAGTGTCTTCTGCGAGCACA
LOC_Os01g52420
OsAffx.2313.1.S1_at--646--9051Chr01:30447017..30447041 (25 bp)
TGCAGTGTCTTCTGCGAGCACAAGG
LOC_Os01g52420
OsAffx.2313.1.S1_at--410--1111Chr01:30447020..30447044 (25 bp)
AGTGTCTTCTGCGAGCACAAGGGCT
LOC_Os01g52420
OsAffx.2313.1.S1_at--190--7131Chr01:30447023..30447047 (25 bp)
GTCTTCTGCGAGCACAAGGGCTCCC
LOC_Os01g52420
Target Sequence 
TGACGTCCCAGCCAAGCTCTGGGCTAGAGGTGCCAATGCCCCGTTCCCCACGGGACACCCTAACCCCTTTGTCCTCGAGC
GCCTCCTCCGCCTGCTCACCTCCTGCAGTGTCTTCTGCGAGCACAAGGGCTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis