Browse Element(s) Details


Os.23709.1.S1_at

Description gb:AK120924.1
DB_XREF= gi:37990547
TID=Os.23709.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0690B02.19 (P0690B02.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035N24, full insert sequence.
FL= gb:AK120924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5238010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52320OsAffx.910.1.S1_at3/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52320Os.35895.2.S1_x_at1/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52330NANA1+30402471..30403973NB-ARC domain containing protein, expressed
LOC_Os01g52340Os.18053.1.S1_at11/111+30406496..30408328NB-ARC domain containing protein, expressed
LOC_Os01g52350OsAffx.2311.1.S1_at11/111+30409693..30410557hypothetical protein
LOC_Os01g52360OsAffx.23763.1.S1_at11/111+30410839..30412329NB-ARC domain containing protein
LOC_Os01g52370Os.22675.1.S1_at3/111+30415035..30415785expressed protein
LOC_Os01g52380Os.23709.1.S1_at10/111+30418212..30420020expressed protein
LOC_Os01g52380Os.35895.2.S1_x_at1/111+30418212..30420020expressed protein
LOC_Os01g52390Os.11159.1.S1_at11/111+30422267..30425641retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52400Os.52362.1.S1_at11/111+30429832..30434188acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase containing protein, expressed
LOC_Os01g52410OsAffx.2312.1.S1_at11/111+30444067..30445393Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23709.1.S1_at--770--2711Chr01:30419467..30419491 (25 bp)
AAGCATGTCCGTCTGTTTGGTGAAC
LOC_Os01g52380
Os.23709.1.S1_at--105--7731Chr01:30419518..30419542 (25 bp)
GGTGGACTTACTTACGTTTGGATGC
LOC_Os01g52380
Os.23709.1.S1_at--1118--2391Chr01:30419551..30419575 (25 bp)
AAACATGGCTGCAGTGGCCTAGCGA
LOC_Os01g52380
Os.23709.1.S1_at--433--7551Chr01:30419564..30419588 (25 bp)
GTGGCCTAGCGACATACAAACTTTA
LOC_Os01g52380
Os.23709.1.S1_at--24--3011Chr01:30419614..30419638 (25 bp)
AATCTACCAACGATACGATCAATTG
LOC_Os01g52380
Os.23709.1.S1_at--381--6451Chr01:30419630..30419654 (25 bp)
GATCAATTGATATGGTTTCTCGAAA
LOC_Os01g52380
Os.23709.1.S1_at--534--7811Chr01:30419643..30419667 (25 bp)
GGTTTCTCGAAATGTTAAGCCTCGA
LOC_Os01g52380
Os.23709.1.S1_at--53--1691Chr01:30419660..30419684 (25 bp)
AGCCTCGAGCGAAATATGAAGTCTT
LOC_Os01g52380
Os.23709.1.S1_at--1087--2371Chr01:30419835..30419859 (25 bp)
AAACTGTATTGTAGGTCCATCCATA
LOC_Os01g52380
Os.23709.1.S1_at--759--9811Chr01:30419936..30419960 (25 bp)
TAACTTGTTGTTTGCCCCATGTTTT
LOC_Os01g52380
Os.23709.1.S1_at--549--5011Chr01:30420008..30420032 (25 bp)
GCAGGAATGCTGTGTCATCTTCCGT
NONE
Target Sequence 
AAGCATGTCCGTCTGTTTGGTGAACACCCAAGAGACACAAATAAAAATAACGGTGGACTTACTTACGTTTGGATGCATAA
AAACAAACATGGCTGCAGTGGCCTAGCGACATACAAACTTTATCAAGCAAGTTCTATAAGTCAAAATAATCTACCAACGA
TACGATCAATTGATATGGTTTCTCGAAATGTTAAGCCTCGAGCGAAATATGAAGTCTTGGAATGGCAATCCAGCATACCT
CCATACTATAGNTACATCGCNNAATACGAGATACTTGCACAACCGAAACTCATGCTACCTCCTAAAAGGAAGCGATCCGG
GGCGCTCTCAGAAGAGTTAGTTTGATCTGGAATGGAATTGGTGTTGTCAAACTGTATTGTAGGTCCATCCATATGGCAAA
GCAAACAATTTGGATGCTATAACATCAACAGTTTAGCAAATATGTTAGTCCATTNTTATCCANTTATTTTAACTTGTTGT
TTGCCCCATGTTTTCCCCCCTTTTGATGATGTAAACTTACAACAGTTATGTACATCCCTNTGCAGGAATGCTGTGTCATC
TTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis