Browse Element(s) Details


OsAffx.910.1.S1_at

Description gb:NM_191808.1
DB_XREF= gi:34910699
GEN=P0690B02.14
TID=OsAffx.910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0690B02.14 (P0690B02.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g523203/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed
LOC_Os01g52270OsAffx.23761.2.S1_x_at11/111+30375076..30376746NB-ARC domain containing protein, expressed
LOC_Os01g52280OsAffx.21532.1.S1_at11/111+30382414..30383886NB-ARC domain containing protein, expressed
LOC_Os01g52290Os.32172.1.S1_at11/111+30386111..30387810expressed protein
LOC_Os01g52304Os.35895.1.S1_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52304Os.35895.2.S1_x_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52320OsAffx.910.1.S1_at3/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52320Os.35895.2.S1_x_at1/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52330NANA1+30402471..30403973NB-ARC domain containing protein, expressed
LOC_Os01g52340Os.18053.1.S1_at11/111+30406496..30408328NB-ARC domain containing protein, expressed
LOC_Os01g52350OsAffx.2311.1.S1_at11/111+30409693..30410557hypothetical protein
LOC_Os01g52360OsAffx.23763.1.S1_at11/111+30410839..30412329NB-ARC domain containing protein
LOC_Os01g52370Os.22675.1.S1_at3/111+30415035..30415785expressed protein
LOC_Os01g52380Os.23709.1.S1_at10/111+30418212..30420020expressed protein
LOC_Os01g52380Os.35895.2.S1_x_at1/111+30418212..30420020expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.910.1.S1_at--208--2631Chr01:30396810..30396834 (25 bp)
AACCGGAACTGTTAAGCCTCAGGCA
LOC_Os01g52320
OsAffx.910.1.S1_at--139--4971Chr01:30396866..30396890 (25 bp)
GCATACCTCCATACATTAGCTACAT
LOC_Os01g52320
OsAffx.910.1.S1_at--229--151Chr01:30396880..30396904 (25 bp)
ATTAGCTACATCACGCAATACGAGA
LOC_Os01g52320
OsAffx.910.1.S1_at--200--4551Chr01:30397378..30397402 (25 bp)
GCCCATTAAGGAAGCGGCGCATGTT
NONE
OsAffx.910.1.S1_at--86--3671Chr01:30397417..30397441 (25 bp)
CTATTACCCGGATAAAGCCATGCTC
NONE
OsAffx.910.1.S1_at--314--631Chr01:30397436..30397566 (25 bp)
ATGCTCCGGCCTAGGGCTCTTGAAG
NONE
OsAffx.910.1.S1_at--308--8831Chr01:30397607..30397631 (25 bp)
TGATAGGCCTCCGAAGTCCTTATAC
NONE
OsAffx.910.1.S1_at--681--10151Chr01:30397627..30397651 (25 bp)
TATACGGCTTCGGAGGCCACGGAGC
NONE
OsAffx.910.1.S1_at--86--6231Chr01:30397658..30397682 (25 bp)
GAGGCCTTGGTCAATTCCGGAGCCC
NONE
OsAffx.910.1.S1_at--68--7691Chr01:30397685..30397709 (25 bp)
GGGTAGCTCCGGAAGCCTCAAACAG
NONE
OsAffx.910.1.S1_at--1061--2371Chr01:30397704..30397728 (25 bp)
AAACAGCTCCGGAGCCTACGGGAGG
NONE
Target Sequence 
AACCGGAACTGTTAAGCCTCAGGCAGCAAAATATGAAGTCTTGGAATGGCAATCCAGCATACCTCCATACATTAGCTACA
TCACGCAATACGAGATACTTGCACAACAGAAACTTATGCTACCTCCTAAAAGGAAGCGATCCGGGGCGCTCTCAGAAGAG
AGGGCTGCGCCCATTAAGGAAGCGGCGCATGTTCCCGAGGGTGCCCGCTATTACCCGGATAAAGCCATGCTCCGGCCTAG
GGCTCTTGAAGCCCTGGTTTCCTCCGGGGCAGCAGTTAGCCCTGGAGGCCTTGATAGGCCTCCGAAGTCCTTATACGGCT
TCGGAGGCCACGGAGCGCTCCGGAGGCCTTGGTCAATTCCGGAGCCCCTGGGTAGCTCCGGAAGCCTCAAACAGCTCCGG
AGCCTACGGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis