Browse Element(s) Details


Os.18053.1.S1_at

Description gb:AK063472.1
DB_XREF= gi:32973490
TID=Os.18053.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0690B02.16 (P0690B02.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-A09, full insert sequence.
FL= gb:AK063472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5234011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52280OsAffx.21532.1.S1_at11/111+30382414..30383886NB-ARC domain containing protein, expressed
LOC_Os01g52290Os.32172.1.S1_at11/111+30386111..30387810expressed protein
LOC_Os01g52304Os.35895.1.S1_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52304Os.35895.2.S1_x_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52320OsAffx.910.1.S1_at3/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52320Os.35895.2.S1_x_at1/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52330NANA1+30402471..30403973NB-ARC domain containing protein, expressed
LOC_Os01g52340Os.18053.1.S1_at11/111+30406496..30408328NB-ARC domain containing protein, expressed
LOC_Os01g52350OsAffx.2311.1.S1_at11/111+30409693..30410557hypothetical protein
LOC_Os01g52360OsAffx.23763.1.S1_at11/111+30410839..30412329NB-ARC domain containing protein
LOC_Os01g52370Os.22675.1.S1_at3/111+30415035..30415785expressed protein
LOC_Os01g52380Os.23709.1.S1_at10/111+30418212..30420020expressed protein
LOC_Os01g52380Os.35895.2.S1_x_at1/111+30418212..30420020expressed protein
LOC_Os01g52390Os.11159.1.S1_at11/111+30422267..30425641retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52400Os.52362.1.S1_at11/111+30429832..30434188acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18053.1.S1_at--1155--1391Chr01:30407782..30407806 (25 bp)
AGACATTCATATCCGTGAGCTAGGC
LOC_Os01g52340
Os.18053.1.S1_at--194--7391Chr01:30407796..30407820 (25 bp)
GTGAGCTAGGCGAACATCCAACTGA
LOC_Os01g52340
Os.18053.1.S1_at--456--1091Chr01:30407837..30407861 (25 bp)
AGTGGACACACTTGCGTTTGGACGC
LOC_Os01g52340
Os.18053.1.S1_at--102--10251Chr01:30407853..30407877 (25 bp)
TTTGGACGCCTGAAAATCGGTGTGT
LOC_Os01g52340
Os.18053.1.S1_at--1099--2991Chr01:30407936..30407960 (25 bp)
AATGATCAGCCCATGGTGCTAGCAA
LOC_Os01g52340
Os.18053.1.S1_at--519--6651Chr01:30407999..30408023 (25 bp)
GTTGATGTCCTGCAATGGCGATCGA
LOC_Os01g52340
Os.18053.1.S1_at--375--8371Chr01:30408015..30408039 (25 bp)
GGCGATCGAAGATACCACCTTACTA
LOC_Os01g52340
Os.18053.1.S1_at--465--4311Chr01:30408032..30408056 (25 bp)
CCTTACTACTGCTACATGGCACATT
LOC_Os01g52340
Os.18053.1.S1_at--1065--2071Chr01:30408052..30408076 (25 bp)
ACATTTCGAGGTACTTGCACGGCCG
LOC_Os01g52340
Os.18053.1.S1_at--332--6931Chr01:30408194..30408218 (25 bp)
GTATGGATGCCGTAACAACAACTGA
LOC_Os01g52340
Os.18053.1.S1_at--784--1331Chr01:30408233..30408257 (25 bp)
AGAGAGTTTGCTCACATGTTTCCCC
LOC_Os01g52340
Target Sequence 
AGACATTCATATCCGTGAGCTAGGCGAACATCCAACTGAAACATATAAAAGGATAAGTGGACACACTTGCGTTTGGACGC
CTGAAAATCGGTGTGTTACTGAAGCGACATATGCATTGACATACACTCTTTATCAAGCAAGTTNTGAAGATCTGAATGAT
CAGCCCATGGTGCTAGCAAGCGATGTTCTTGTTGGAAATGTTCAGCTTCAAGGGAAAGTTGATGTCCTGCAATGGCGATC
GAAGATACCACCTTACTACTGCTACATGGCACATTTCGAGGTACTTGCACGGCCGCTGCATATGCCGCCTAAAAGGAAGC
GATCCCGGTCACTGTNTGGACAGTTAGTTTGATNTGAAATCGTTGGGGTCACTAGAGTNTAGAGTTGGTTGATCCATATG
GCACAGGAAACAGTATGGATGCCGTAACAACAACTGATAGTTTAGTTCAACAGAGAGTTTGCTCACATGTTTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis