Browse Element(s) Details


OsAffx.2311.1.S1_at

Description tigr:9629.m05080
TID=OsAffx.2311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5235011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52290Os.32172.1.S1_at11/111+30386111..30387810expressed protein
LOC_Os01g52304Os.35895.1.S1_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52304Os.35895.2.S1_x_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52320OsAffx.910.1.S1_at3/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52320Os.35895.2.S1_x_at1/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52330NANA1+30402471..30403973NB-ARC domain containing protein, expressed
LOC_Os01g52340Os.18053.1.S1_at11/111+30406496..30408328NB-ARC domain containing protein, expressed
LOC_Os01g52350OsAffx.2311.1.S1_at11/111+30409693..30410557hypothetical protein
LOC_Os01g52360OsAffx.23763.1.S1_at11/111+30410839..30412329NB-ARC domain containing protein
LOC_Os01g52370Os.22675.1.S1_at3/111+30415035..30415785expressed protein
LOC_Os01g52380Os.23709.1.S1_at10/111+30418212..30420020expressed protein
LOC_Os01g52380Os.35895.2.S1_x_at1/111+30418212..30420020expressed protein
LOC_Os01g52390Os.11159.1.S1_at11/111+30422267..30425641retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52400Os.52362.1.S1_at11/111+30429832..30434188acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2311.1.S1_at--979--8491Chr01:30410303..30410324 (22 bp)
TGGCAGGTCCCACTAGTTCTTGCAA
LOC_Os01g52350
OsAffx.2311.1.S1_at--309--2031Chr01:30410311..30410335 (25 bp)
ACTAGTTCTTGCAATAGGGCCTGAA
LOC_Os01g52350
OsAffx.2311.1.S1_at--247--10051Chr01:30410325..30410349 (25 bp)
TAGGGCCTGAAATACCACTTTTACA
LOC_Os01g52350
OsAffx.2311.1.S1_at--365--2031Chr01:30410341..30410365 (25 bp)
ACTTTTACAATTCCCTTCACAACAG
LOC_Os01g52350
OsAffx.2311.1.S1_at--785--3111Chr01:30410348..30410372 (25 bp)
CAATTCCCTTCACAACAGTTAACCA
LOC_Os01g52350
OsAffx.2311.1.S1_at--875--2471Chr01:30410361..30410385 (25 bp)
AACAGTTAACCATAGTGACATTTTT
LOC_Os01g52350
OsAffx.2311.1.S1_at--1118--5032Chr01:30417869..30417893 (25 bp)
GCAGATCCATATCCTACATATTCCT
NONE
OsAffx.2311.1.S1_at--1094--9232Chr01:30417874..30417898 (25 bp)
TCCATATCCTACATATTCCTCATTG
NONE
OsAffx.2311.1.S1_at--712--9891Chr01:30410450..30410474 (25 bp)
TACTACTGGAATCAAGCAGCGGTGT
LOC_Os01g52350
OsAffx.2311.1.S1_at--599--471Chr01:30410484..30410508 (25 bp)
ATCTGACATGGTTACATTGCGGCAC
LOC_Os01g52350
OsAffx.2311.1.S1_at--928--72Chr01:30417953..30417977 (25 bp)
ATTGCGGCACTGCTGTCAATGGAAG
NONE
Target Sequence 
TGGCAGGTCCCACTAGTTCTTGCAATAGGGCCTGAAATACCACTTTTACAATTCCCTTCACAACAGTTAACCATAGTGAC
ATTTTTTTTGCCTGCACTTCTTGGTGATCTTATAAGCAGATCCATATCCTACATATTCCTCATTGATATATACTACTGGA
ATCAAGCAGCGGTGTGGAGGGAGAATCTGACATGGTTACATTGCGGCACTGCTGTCAATGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis