Browse Element(s) Details


Os.30136.1.S1_at

Description gb:AK109219.1
DB_XREF= gi:32994428
TID=Os.30136.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1112D09.18 (B1112D09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-E03, full insert sequence.
FL= gb:AK109219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g194364/11Nicotianamine synthase 1, putative, expressed
LOC_Os03g038602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19370Os.56365.1.S1_at11/113+10884435..10885840bZIP transcription factor family protein, expressed
LOC_Os03g19380Os.10732.1.S1_s_at11/113+10889395..10890371CP12, putative, expressed
LOC_Os03g19390Os.11668.1.S1_at11/113+10890530..10892444Seed maturation protein PM36, putative, expressed
LOC_Os03g19400OsAffx.3275.1.S1_at11/113+10892628..10895524expressed protein
LOC_Os03g19410Os.9620.1.S1_at11/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19410Os.11159.1.S1_at1/113+10897165..10904734prolyl oligopeptidase family protein, expressed
LOC_Os03g19420Os.9311.1.S1_at11/113+10905302..10906769Nicotianamine synthase 2, putative, expressed
LOC_Os03g19436Os.1478.1.S1_at11/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436OsAffx.25145.1.S1_at7/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19436Os.30136.1.S1_at4/113+10908316..10913811Nicotianamine synthase 1, putative, expressed
LOC_Os03g19452Os.46810.1.S1_at11/113+10917951..10923025expressed protein
LOC_Os03g19452OsAffx.3276.1.S1_at10/113+10917951..10923025expressed protein
LOC_Os03g19452Os.46810.2.S1_x_at1/113+10917951..10923025expressed protein
LOC_Os03g19470OsAffx.12937.1.S1_at11/113+10928353..10930665expressed protein
LOC_Os03g19480Os.21566.1.S1_at10/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19480Os.52782.1.S1_at1/113+10931168..10938668Polycomb protein EZ3, putative, expressed
LOC_Os03g19490Os.34204.1.S1_at11/113+10938592..10941213expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30136.1.S1_at--793--7772Chr01:22548808..22548832 (25 bp)
GGTGCAGGCGTGGTGGATCCGGCCA
NONE
Os.30136.1.S1_at--112--8412Chr01:22548901..22548925 (25 bp)
GGCGCGCGGCTGATCTGGGCACGGG
NONE
Os.30136.1.S1_at--420--935Chr02:4847205..4847225 (21 bp)
AGGCACGACCGCACGAGAGGATCCT
NONE
Os.30136.1.S1_at--653--9253Chr01:22549078..22549102 (25 bp)
TCCTCTCTTCAGTTCATGCGTTTGG
NONE
Os.30136.1.S1_at--18--3454Chr01:22549087..22549111 (25 bp)
CAGTTCATGCGTTTGGTTCTGATCT
NONE
Os.30136.1.S1_at--49--4654Chr01:22549095..22549119 (25 bp)
GCGTTTGGTTCTGATCTGTTTGCAC
NONE
Os.30136.1.S1_at--896--7894Chr01:22549101..22549122 (22 bp)
GGTTCTGATCTGTTTGCACGTGAAA
NONE
Os.30136.1.S1_at--829--8774Chr01:22549111..22549222 (25 bp)
TGTTTGCACGTGAAACCATTTCTGC
NONE
Os.30136.1.S1_at--666--8293Chr07:7024125..7024454 (25 bp)
GGCTTGAATGCTTGAACTTTTTTGA
NONE
Os.30136.1.S1_at--284--9834Chr01:22549379..22549403 (25 bp)
TAAATTTAAATTGTGCTTGTGTGAA
NONE
Os.30136.1.S1_at--450--8952Chr01:22549414..22549438 (25 bp)
TGACTATAATTTTTGGTTGGGTGAA
NONE
Target Sequence 
GGTGCAGGCGTGGTGGATCCGGCCACCGCAGAGCCGCGGGGGGCGGATCTGGCCGCCGGAGGGCCACGGGGAGCGGATCC
GAGCGCGGGCGGCGGCGCGCGGCTGATCTGGGCACGGGCGGCTGCTCTCGGACGCCGGCGGCGGTGCGCGGCGGATCCAG
GCGCTAGCGGGGAGGCTAGATCCGCCGCCGCCAGATCGGCGGCGCCTGGCCGGTGGTCACCGGGGAGCTGCATGCTAGCT
GCAGAGAGGAGGCACGACCGCACGAGAGGATCCTCTCTTCAGTTCATGCGTTTGGTTCTGATCTGTTTGCACGTGAAACC
ATTTCTGCAGCGGGCTGCGGTGGAGGCTGCGGCGGGGCTCTGTGCAGCGGTGGTGGAGGCCGGCGGGGCTCGGCGGCGGC
GTCGTCGAGGCAGAGGCAGTGGAGGCTTGAATGCTTGAACTTTTTTGATGCTTGAATGCTTGGGGGAATAGAAATTTTTG
ACTGTAAATTTAAATTGTGCTTGTGTGAATTGAATTTTTTGACTATAATTTTTGGTTGGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis