Browse Element(s) Details


Os.10607.1.S1_at

Description gb:AK058908.1
DB_XREF= gi:32968926
TID=Os.10607.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.10607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endoplasmic reticulum membrane fusion protein (OSJNBa0046P18.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-E02, full insert sequence.
FL= gb:AK058908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3058011/11Cell division cycle protein 48 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30550Os.46675.1.S1_at10/1110+15555578..15564215methyltransferase family protein, expressed
LOC_Os10g30560NANA10+15564672..15566669UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g30570OsAffx.18466.1.S1_at11/1110+15570168..15573423Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g30580Os.10607.1.S1_at11/1110+15582075..15586577Cell division cycle protein 48 homolog, putative, expressed
LOC_Os10g30590Os.46315.3.S1_x_at11/1110+15588892..15590373pentatricopeptide, putative
LOC_Os10g30600Os.46674.1.S1_at10/1110+15591736..15594562Protein kinase domain containing protein, expressed
LOC_Os10g30610Os.27646.1.A1_at11/1110+15599403..15607334ABC transporter family protein, putative, expressed
LOC_Os10g30620Os.46810.2.S1_x_at9/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.2.S1_at8/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.1.S1_at4/1110+15609052..15613146hypothetical protein
LOC_Os10g30620OsAffx.3276.1.S1_at3/1110+15609052..15613146hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016558biological_processprotein import into peroxisome matrix
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10607.1.S1_at--786--9951Chr10:15586082..15586106 (25 bp)
TACGCGCGCCGCAGTGTCAGCGATG
LOC_Os10g30580
Os.10607.1.S1_at--893--891Chr10:15586125..15586149 (25 bp)
AGGCGTTCGCCCAGACGTTGCAGCA
LOC_Os10g30580
Os.10607.1.S1_at--582--1891Chr10:15586139..15586163 (25 bp)
ACGTTGCAGCAGTCTCGCGGGTTTG
LOC_Os10g30580
Os.10607.1.S1_at--726--10231Chr10:15586160..15586184 (25 bp)
TTTGGCAGTGAGTTCCGTTTCGAGC
LOC_Os10g30580
Os.10607.1.S1_at--993--10291Chr10:15586177..15586201 (25 bp)
TTTCGAGCGGACAGAAGCTGGTGCT
LOC_Os10g30580
Os.10607.1.S1_at--1030--8531Chr10:15586201..15586225 (25 bp)
TGGAGCTGCGGCTGATCCTTTTGCG
LOC_Os10g30580
Os.10607.1.S1_at--59--6771Chr10:15586310..15586334 (25 bp)
GTTCAATATTGGTTCCATCTGCCAT
LOC_Os10g30580
Os.10607.1.S1_at--700--471Chr10:15586326..15586350 (25 bp)
ATCTGCCATGCCTTTGTGTTGAAAC
LOC_Os10g30580
Os.10607.1.S1_at--155--1851Chr10:15586367..15586391 (25 bp)
ACGGCAAAGCCCTCTGGTTATATTT
LOC_Os10g30580
Os.10607.1.S1_at--937--10371Chr10:15586393..15586417 (25 bp)
TTTTCAGTGCAATAGGGTGCTGCTT
LOC_Os10g30580
Os.10607.1.S1_at--694--5211Chr10:15586488..15586512 (25 bp)
GAATTTCCCAACAATATACAGCTAT
LOC_Os10g30580
Target Sequence 
TACGCGCGCCGCAGTGTCAGCGATGCCGANATCCGCAAGTACCAGGCGTTCGCCCAGACGTTGCAGCAGTCTCGCGGGTT
TGGCAGTGAGTTCCGTTTCGAGCGGACAGAAGCTGGTGCTGGAGCTGCGGCTGATCCTTTTGCGTCTGCTGCCGCCGTCG
CTGATGANGACGATTTATATAGTTAGGTTGNCTGTTGTGTCCTTCGTTAGCTCGCCCTCCGAGTTTGTGTTCAATATTGG
TTCCATCTGCCATGCCTTTGTGTTGAAACTAATCGTACTTGAAACACGGCAAAGCCCTCTGGTTATATTTATTTTCAGTG
CAATAGGGTGCTGCTTGGCTGAGGACGATGCCCTCGGNCTAAGCCGTTGCCCTCCTGTGGCTGGCTACTGGACGATGACA
ATTTNNGAATTTCCCAACAATATACAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis