Browse Element(s) Details


Os.22913.1.S1_at

Description gb:AK063397.1
DB_XREF= gi:32973415
TID=Os.22913.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) translin-like protein (OSJNBb0015F09b.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H10, full insert sequence.
FL= gb:AK063397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3064010/11Translin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30600Os.46674.1.S1_at10/1110+15591736..15594562Protein kinase domain containing protein, expressed
LOC_Os10g30610Os.27646.1.A1_at11/1110+15599403..15607334ABC transporter family protein, putative, expressed
LOC_Os10g30620Os.46810.2.S1_x_at9/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.2.S1_at8/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.1.S1_at4/1110+15609052..15613146hypothetical protein
LOC_Os10g30620OsAffx.3276.1.S1_at3/1110+15609052..15613146hypothetical protein
LOC_Os10g30630NANA10+15615504..15615896hypothetical protein
LOC_Os10g30640Os.22913.1.S1_at10/1110+15616867..15620695Translin family protein, expressed
LOC_Os10g30650NANA10+15625290..15628562transposon protein, putative, unclassified
LOC_Os10g30660NANA10+15629205..15635359retrotransposon protein, putative, unclassified
LOC_Os10g30670Os.52659.1.S1_at7/1110+15639281..15640872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30670Os.47371.1.S1_at4/1110+15639281..15640872transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22913.1.S1_at--1135--10511Chr10:15617628..15617652 (25 bp)
TTCATGCACTGGCTTGAGACCGGCG
LOC_Os10g30640
Os.22913.1.S1_at--1142--10531NONE
TTCATGTCCAACGATTTCCCGAGAT
NONE
Os.22913.1.S1_at--332--9691Chr10:15620096..15620120 (25 bp)
TCACTGCTGGAGACTATGACTGTCC
LOC_Os10g30640
Os.22913.1.S1_at--851--191Chr10:15620136..15620160 (25 bp)
ATTTCTGACAGACCTTCATGCTTCA
LOC_Os10g30640
Os.22913.1.S1_at--228--6351Chr10:15620166..15620190 (25 bp)
GATGCTGAACCTGCGCAATGACTTT
LOC_Os10g30640
Os.22913.1.S1_at--568--5331Chr10:15620429..15620453 (25 bp)
GAAGATTCGAGGACTTGTACCAGGG
LOC_Os10g30640
Os.22913.1.S1_at--976--9991Chr10:15620475..15620499 (25 bp)
TAGCAAAGACTGTCGTTCCTCACCG
LOC_Os10g30640
Os.22913.1.S1_at--452--4631Chr10:15620519..15620543 (25 bp)
GCGTTTAGCAAGATCCGTCACTTGT
LOC_Os10g30640
Os.22913.1.S1_at--214--2571Chr10:15620547..15620571 (25 bp)
AACTGTGCTAGTTCCTGTTGGAGTC
LOC_Os10g30640
Os.22913.1.S1_at--389--9531Chr10:15620583..15620607 (25 bp)
TCTAATATCGACTGGGCTGGCCTAT
LOC_Os10g30640
Os.22913.1.S1_at--825--4451Chr10:15620602..15620626 (25 bp)
GCCTATGCTGCCAAATTTACCCGAA
LOC_Os10g30640
Target Sequence 
TTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATTGAGCTCCGGGGAGTT
TGGNCTGGATGTTGAAGATTACCTTACTGGANTGTGCTTCATGTCCAACGATTTCCCGAGATATGTAGTGAANCGTGTCA
CTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGNCATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGAACCTG
CGCAATGACTTTCTNCGTAAGAAGTTTGATGGGATGAAGTATGATTTGAGGAGGGTAGAGGAGGTGTATTATGATGTGAA
GATTCGAGGACTTGTACCAGGGGAGTCCAAACAAGAGGCAGCTTAGCAAAGACTGTCGTTCCTCACCGAGTNGTTTGGAT
CCGTCANGCGTTTAGCAAGATCCGTCACTTGTNNNNNNNNNNNNNNNCTAAACTGTGCTAGTTCCTGTTGGAGTCATTTN
GNTTCCTCTAATATCGACTGGGCTGGCCTATGCTGCCAAATTTACCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis