Browse Element(s) Details


Os.52659.1.S1_at

Description gb:AK068602.1
DB_XREF= gi:32978619
TID=Os.52659.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157E02, full insert sequence.
FL= gb:AK068602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1009011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g306707/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10070Os.9834.1.S1_a_at11/1111+5414900..5423181expressed protein
LOC_Os11g10080OsAffx.18776.1.S1_at11/1111+5432352..5432888hypothetical protein
LOC_Os11g10090Os.52659.1.S1_at11/1111+5437370..5444022transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g10100Os.2444.1.S1_at11/1111+5455747..5460113mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os11g10110OsAffx.18777.1.S1_at11/1111+5460333..5461773expressed protein
LOC_Os11g10110OsAffx.18777.1.S1_s_at10/1111+5460333..5461773expressed protein
LOC_Os11g10120Os.52285.1.S1_at10/1111+5462979..5464738expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52659.1.S1_at--776--652Chr11:5443402..5443426 (25 bp)
ATGAATGTTCTTGCGGTAGACCACA
LOC_Os11g10090
Os.52659.1.S1_at--160--10552Chr11:5443409..5443763 (25 bp)
TTCTTGAGAGTGTTATCCAGCATAC
LOC_Os11g10090
Os.52659.1.S1_at--72--332Chr11:5443760..5443784 (25 bp)
ATACTGGAATGCCTCTACCTGTTGC
LOC_Os11g10090
Os.52659.1.S1_at--980--9512Chr11:5443773..5443797 (25 bp)
TCTACCTGTTGCAATTCCACATCCA
LOC_Os11g10090
Os.52659.1.S1_at--452--4392Chr11:5443809..5443833 (25 bp)
GCCACCACCTACATACGGAGTTTAT
LOC_Os11g10090
Os.52659.1.S1_at--662--3571Chr11:5443820..5443844 (25 bp)
CATACGGAGTTTATCATTCTGCAGA
LOC_Os11g10090
Os.52659.1.S1_at--491--111Chr11:5443835..5443859 (25 bp)
ATTCTGCAGATCAATCTACGGTGAA
LOC_Os11g10090
Os.52659.1.S1_at--678--3112Chr11:5443882..5443906 (25 bp)
AATATTGCAGATGTGTCCTAGAGAT
LOC_Os11g10090
Os.52659.1.S1_at--58--9731Chr11:5443939..5443963 (25 bp)
TCAATGTCATTTTAGTGGCGTTTAC
LOC_Os11g10090
Os.52659.1.S1_at--144--7551Chr11:5443953..5443977 (25 bp)
GTGGCGTTTACTATACATATGCAAC
LOC_Os11g10090
Os.52659.1.S1_at--1022--5152Chr11:5443973..5443997 (25 bp)
GCAACCATTCAAGTGTAGCAGTGTC
LOC_Os11g10090
Target Sequence 
ATGAATGTTCTTGCGGTAGACCACATGGAAAATGGGAAACATTTAATGGGATGGTTGATGATAGCGAGGCTATGGCTAAG
ATCAAGAGAAGATCTACATCTTCAACAGCTAACAAGCGTCGACGACAAGAAGAAGATGACCATGAAAGAGCAAGGCTGAT
CAAGGATGCTCGTATAGCAAAGGAATATGCACAACGAGTGCTGGAGTGGAGTAGTGGCCAAGACAGCTACAACAACACTA
TAAAACTTATTCTTGAGAGTGTTATCCAGCATACTGGAATGCCTCTACCTGTTGCAATTCCACATCCACCGCCGCCGCCG
CCACCACCTACATACGGAGTTTATCATTCTGCAGATCAATCTACGGTGAATGTATGTGGTCATGTTTCTATTAATATTGC
AGATGTGTCCTAGAGATAGATTTTTTTTACCTTGCAATATCCAGCAATTTCAATGTCATTTTAGTGGCGTTTACTATACA
TATGCAACCATTCAAGTGTAGCAGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis