Browse Element(s) Details


Os.52285.1.S1_at

Description gb:AK066082.1
DB_XREF= gi:32976100
TID=Os.52285.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013053H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013053H16, full insert sequence.
FL= gb:AK066082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1012010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10090Os.52659.1.S1_at11/1111+5437370..5444022transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g10100Os.2444.1.S1_at11/1111+5455747..5460113mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os11g10110OsAffx.18777.1.S1_at11/1111+5460333..5461773expressed protein
LOC_Os11g10110OsAffx.18777.1.S1_s_at10/1111+5460333..5461773expressed protein
LOC_Os11g10120Os.52285.1.S1_at10/1111+5462979..5464738expressed protein
LOC_Os11g10130OsAffx.7057.1.S1_at11/1111+5475121..5478466Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g10140OsAffx.30914.1.S1_x_at5/1111+5486848..5488471flavin-containing monooxygenase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52285.1.S1_at--721--51Chr11:5463519..5463543 (25 bp)
ATTGAGGGTGTGCAGCCCTTTAGCT
LOC_Os11g10120
Os.52285.1.S1_at--152--7851Chr11:5463445..5463469 (25 bp)
GGTACATTGTTCTGAATCGCTGTCA
LOC_Os11g10120
Os.52285.1.S1_at--762--3031Chr11:5463431..5463455 (25 bp)
AATCGCTGTCAGCAGTTCGTCGCAT
LOC_Os11g10120
Os.52285.1.S1_at--1020--571Chr11:5463408..5463432 (25 bp)
ATCCAGTTCCAGGTTTGTTACTCCA
LOC_Os11g10120
Os.52285.1.S1_at--83--10391Chr11:5463382..5463406 (25 bp)
TTATTCTGGGTTGTAAGCTTCTTCC
LOC_Os11g10120
Os.52285.1.S1_at--1034--3271Chr11:5463357..5463381 (25 bp)
CAAACACCTGCAACGCTGCTTTGGG
LOC_Os11g10120
Os.52285.1.S1_at--378--5511Chr11:5463273..5463297 (25 bp)
GAACAACTGTGTCGTCGTCAGTGAA
LOC_Os11g10120
Os.52285.1.S1_at--1044--5271Chr11:5463225..5463249 (25 bp)
GAATGTTGCGACTGATTACTTTGAT
LOC_Os11g10120
Os.52285.1.S1_at--148--8291NONE
GGCATAGCTCTGTACATAGGTCCAA
NONE
Os.52285.1.S1_at--800--3571Chr11:5463114..5463138 (25 bp)
CATAGGTCCAATGCCTGTTCCAAAA
LOC_Os11g10120
Os.52285.1.S1_at--272--7931Chr11:5463056..5463080 (25 bp)
GGATTTTCCATCCACGAAGACTTTT
LOC_Os11g10120
Target Sequence 
ATTGAGGGTGTGCAGCCCTTTAGCTGNNAAAGTTGTGAGTGGACTGCTTCGAGAANACCNTCAATGAGAAGTACTGGTAC
ATTGTTCTGAATCGCTGTCAGCAGTTCGTCGCATCCAGTTCCAGGTTTGTTACTCCATTTATTCTGGGTTGTAAGCTTCT
TCCCAAACACCTGCAACGCTGCTTTGGGGTGTTGGGTACATACCCTCGCTGGACCTTCACAAGGGAGGAATTGATAAGCT
ATTGGATGAACAACTGTGTCGTCGTCAGTGAAAATTGTATGAAAAATAGCATAGAGAATGTTGCGACTGATTACTTTGAT
GATTTGGTGAGGAAGGCATTCATACAACCATCCCACATCCCAGGGCTGTACAAAGTGGATGACATGCTAAGAGGCATAGC
TCTGTACATAGGTCCAATGCCTGTTCCAAAAACAAGAATACATTTAGCGAATTTGATTGGGGAAGGATTTTCCATCCACG
AAGACTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis