Browse Element(s) Details


OsAffx.18776.1.S1_at

Description tigr:9639.m00952
TID=OsAffx.18776.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1008011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10070Os.9834.1.S1_a_at11/1111+5414900..5423181expressed protein
LOC_Os11g10080OsAffx.18776.1.S1_at11/1111+5432352..5432888hypothetical protein
LOC_Os11g10090Os.52659.1.S1_at11/1111+5437370..5444022transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g10100Os.2444.1.S1_at11/1111+5455747..5460113mitogen-activated kinase kinase kinase alpha, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18776.1.S1_at--949--2491Chr11:5432382..5432406 (25 bp)
AACATAGTCTCGACTAGCACCACAT
LOC_Os11g10080
OsAffx.18776.1.S1_at--720--1151Chr11:5432387..5432411 (25 bp)
AGTCTCGACTAGCACCACATTGCAT
LOC_Os11g10080
OsAffx.18776.1.S1_at--1153--4971Chr11:5432408..5432432 (25 bp)
GCATCCCGCGCTGCAACAGGAAAGA
LOC_Os11g10080
OsAffx.18776.1.S1_at--958--7631Chr11:5432450..5432474 (25 bp)
GGGAGCGCGTTCTCGTGTCAGATAT
LOC_Os11g10080
OsAffx.18776.1.S1_at--408--6731Chr11:5432458..5432482 (25 bp)
GTTCTCGTGTCAGATATGCTCCATC
LOC_Os11g10080
OsAffx.18776.1.S1_at--639--7451Chr11:5432464..5432488 (25 bp)
GTGTCAGATATGCTCCATCCGAGGA
LOC_Os11g10080
OsAffx.18776.1.S1_at--1057--3971Chr11:5432503..5432527 (25 bp)
CGGTGGAGCATGTGTTCGTGCTAGA
LOC_Os11g10080
OsAffx.18776.1.S1_at--906--5591Chr11:5432593..5432830 (25 bp)
GAAATTTTGGGCACTGGATCAATAT
LOC_Os11g10080
OsAffx.18776.1.S1_at--460--8651Chr11:5432600..5432837 (25 bp)
TGGGCACTGGATCAATATTACCGCA
LOC_Os11g10080
OsAffx.18776.1.S1_at--977--7951Chr11:5432821..5432845 (25 bp)
GGATCAATATTACCGCAGGTGGAGA
LOC_Os11g10080
OsAffx.18776.1.S1_at--832--1791Chr11:5432832..5432856 (25 bp)
ACCGCAGGTGGAGATGTTACTGTCT
LOC_Os11g10080
Target Sequence 
AACATAGTCTCGACTAGCACCACATTGCATCCCGCGCTGCAACAGGAAAGAGGAAGAGGAGGAGGCGAGGGAGCGCGTTC
TCGTGTCAGATATGCTCCATCCGAGGAGCAAGAGGATGCAGCGGTGGAGCATGTGTTCGTGCTAGAGATGGGGCTCCAGC
TAAGGAGAAGAAAGGAAGGGAAAGATGGGGAGTGGAGAGGAAAGATAAGGGGAAATTTTGGGCACTGGATCAATATTACC
GCAGGTGGAGATGTTACTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis