Browse Element(s) Details


OsAffx.24046.5.S1_x_at

Description tigr:9630.m00004
TID=OsAffx.24046.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0104010/11hypothetical protein
LOC_Os08g189604/11Transposase, putative
LOC_Os01g568303/11hAT family dimerisation domain containing protein
LOC_Os01g280403/11hAT family dimerisation domain containing protein
LOC_Os06g147302/11Transposase, putative
LOC_Os12g279801/11hAT family dimerisation domain containing protein
LOC_Os06g073701/11hAT family dimerisation domain containing protein
LOC_Os07g178501/11hAT family dimerisation domain containing protein
LOC_Os05g400901/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01010Os.13477.1.S1_at9/112+3514..8377protein disulfide isomerases containing protein, expressed
LOC_Os02g01020Os.20689.1.S1_at11/112+9286..13896expressed protein
LOC_Os02g01030Os.11705.1.S1_at11/112+14069..18542tetratricopeptide repeat, putative, expressed
LOC_Os02g01030OsAffx.11854.1.S1_x_at11/112+14069..18542tetratricopeptide repeat, putative, expressed
LOC_Os02g01040OsAffx.24046.5.S1_x_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.5.S1_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.7.S1_x_at5/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.3.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.2.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040Os.43764.1.A1_at1/112+22133..24960hypothetical protein
LOC_Os02g01050Os.50704.1.S1_at10/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01050OsAffx.20303.1.S1_at7/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01060Os.16004.1.S1_at11/112+33032..33966Harpin-induced protein 1 containing protein, expressed
LOC_Os02g01070Os.52725.1.S1_at11/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01070Os.52725.2.S1_at9/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01080Os.15409.1.S1_at11/112+42347..43816expressed protein
LOC_Os02g01090OsAffx.24047.1.S1_at11/112+48497..48880Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24046.5.S1_x_at--187--5599Chr06:8298842..8298866 (25 bp)
GAAATGTTGTTGTTCCCATGAAAAG
LOC_Os06g14730
OsAffx.24046.5.S1_x_at--275--8611Chr02:23197..23221 (25 bp)
TGGTGCCAGTGATGCACTTGGACTT
LOC_Os02g01040
OsAffx.24046.5.S1_x_at--593--2072Chr08:11300157..11300178 (22 bp)
ACTTGGACTTGGTGCTGGTGCCAGT
LOC_Os08g18960
OsAffx.24046.5.S1_x_at--934--3891Chr02:23138..23162 (25 bp)
CTGGTTCATTTTCCATGAGAACTTT
LOC_Os02g01040
OsAffx.24046.5.S1_x_at--316--8812Chr10:6519502..6519521 (20 bp)
TGAGAACTTTTGCTACTACTTTGAT
NONE
OsAffx.24046.5.S1_x_at--1053--9754Chr01:33150972..33150996 (25 bp)
TAATGCTAACTTGAATGCCTCTGAG
LOC_Os01g56830
OsAffx.24046.5.S1_x_at--641--3775Chr06:8299269..8299293 (25 bp)
CTCTGAGTTGTCTGCCTATCTTGAT
LOC_Os06g14730
OsAffx.24046.5.S1_x_at--480--10131NONE
TATCCTAAACTGTGAACAAGTGGCA
NONE
OsAffx.24046.5.S1_x_at--469--5131Chr02:22339..22363 (25 bp)
GCAAATGTCTTAGGCGTGCCTGGGC
LOC_Os02g01040
OsAffx.24046.5.S1_x_at--1117--5091Chr02:22271..22295 (25 bp)
GCACGACTGCTGTAGGGCCGTGCCT
LOC_Os02g01040
OsAffx.24046.5.S1_x_at--139--4351Chr02:22185..22209 (25 bp)
CCAGGTGGCCATACATTGAACAATG
LOC_Os02g01040
Target Sequence 
GAAATGTTGTTGTTCCCATGAAAAGCAGTACTACTAGTAATAAAAAGACAGCTTGGGGAAAGATTTTTGGTGCCAGTGAT
GCACTTGGACTTGGTGCTGGTGCCAGTCCAGGTTCTGGACTTGGTGCTGGTTCATTTTCCATGAGAACTTTTGCTACTAC
TTTGATTCAGGCTGTTTCTTTTAATGCTAACTTGAATGCCTCTGAGTTGTCTGCCTATCTTGATAGTGACACTGTCAACC
AATTCGACAATGACTTCAATATCCTAAACTGTGAACAAGTGGCAAATGTCTTAGGCGTGCCTGGGCTGGCCCGGGCACGG
TGGGCTCGTCGTGCCATCAGGCCGGCACGGCACGACTGCTGTAGGGCCGTGCCTGGGCCTGAGGTCCAGCCCGTGGGTAG
GCACGGCCGTGCTGGCCTGATCGCCTCGGGCCGTGCCAGGTGGCCATACATTGAACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24046.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis