Browse Element(s) Details


Os.13477.1.S1_at

Description gb:AK071514.1
DB_XREF= gi:32981537
TID=Os.13477.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.13477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023095I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095I04, full insert sequence.
FL= gb:AK071514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g010109/11protein disulfide isomerases containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01010Os.13477.1.S1_at9/112+3514..8377protein disulfide isomerases containing protein, expressed
LOC_Os02g01020Os.20689.1.S1_at11/112+9286..13896expressed protein
LOC_Os02g01030Os.11705.1.S1_at11/112+14069..18542tetratricopeptide repeat, putative, expressed
LOC_Os02g01030OsAffx.11854.1.S1_x_at11/112+14069..18542tetratricopeptide repeat, putative, expressed
LOC_Os02g01040OsAffx.24046.5.S1_x_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.5.S1_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.7.S1_x_at5/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.3.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.2.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040Os.43764.1.A1_at1/112+22133..24960hypothetical protein
LOC_Os02g01050Os.50704.1.S1_at10/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01050OsAffx.20303.1.S1_at7/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01060Os.16004.1.S1_at11/112+33032..33966Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13477.1.S1_at--792--8911NONE
TGAGCATCCACGTGCAAAGCCTGAT
NONE
Os.13477.1.S1_at--1124--2351NONE
AAAGCCTGATGGATTCCCAACGATC
NONE
Os.13477.1.S1_at--543--2591Chr02:4879..4903 (25 bp)
AACGATCCTCTTTTATCCAGCAGGA
LOC_Os02g01010
Os.13477.1.S1_at--264--9731Chr02:3979..4003 (25 bp)
TCAAGAAGCACGCTAGCATCCCTTT
LOC_Os02g01010
Os.13477.1.S1_at--1126--511Chr02:3962..3986 (25 bp)
ATCCCTTTCAAACTGAAGCGGCCGG
LOC_Os02g01010
Os.13477.1.S1_at--39--2671Chr02:3947..3971 (25 bp)
AAGCGGCCGGATTCGTCAGCAACGA
LOC_Os02g01010
Os.13477.1.S1_at--54--7971Chr02:3912..3936 (25 bp)
GGATCAGAGCACAGCTTCAACTAAT
LOC_Os02g01010
Os.13477.1.S1_at--1024--6131Chr02:3876..3900 (25 bp)
GAGGAGTTCCGGTACAAATTTCAAG
LOC_Os02g01010
Os.13477.1.S1_at--609--5891Chr02:3832..3856 (25 bp)
GAGCGGCATTGGTGCAACCTTTGAA
LOC_Os02g01010
Os.13477.1.S1_at--694--2451Chr02:3809..3833 (25 bp)
AACAAGGCAACGACGCTCTCTAGAA
LOC_Os02g01010
Os.13477.1.S1_at--885--10551Chr02:3776..3800 (25 bp)
TTCTTTTTATGTATGCGAGGGCCTG
LOC_Os02g01010
Target Sequence 
TGAGCATCCACGTGCAAAGCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTATTA
CTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGAAGCACGCTAGCATCCCTTTCAAACTGAAGCGG
CCGGATTCGTCAGCAACGAAAACAGAGAAGGATCAGAGCACAGCTTCAACTAATTTGAGGGGGGAGAGGAGTTCCGGTAC
AAATTTCAAGGATGAGTTGTAGTCTTGTAGAGCGGCATTGGTGCAACCTTTGAACAAGGCAACGACGCTCTCTAGAAAAG
GCTGTTTCTTTTTATGTATGCGAGGGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis