Browse Element(s) Details


Os.18474.1.S1_at

Description gb:AU029808
DB_XREF= gi:3763056
DB_XREF=AU029808
CLONE=E31962_8Z
TID=Os.18474.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18474 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47967 (A.thaliana) T47967 hypothetical protein F15G16.140 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g418103/11DOMON domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41740Os.5967.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740Os.53420.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740OsAffx.22502.1.S1_x_at4/114+24521624..24523542expressed protein
LOC_Os04g41750Os.53681.1.S1_at11/114+24525605..24527470expressed protein
LOC_Os04g41750Os.53420.1.S1_x_at1/114+24525605..24527470expressed protein
LOC_Os04g41770OsAffx.26419.1.S1_at11/114+24531688..24533968expressed protein
LOC_Os04g41780OsAffx.14233.1.S1_at11/114+24537204..24537786hypothetical protein
LOC_Os04g41790OsAffx.26420.1.S1_at11/114+24540530..24541023hypothetical protein
LOC_Os04g41800Os.56083.1.S1_at11/114+24542012..24542611expressed protein
LOC_Os04g41810OsAffx.26421.1.S1_s_at11/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.18474.1.S1_at3/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.54560.1.S1_x_at1/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41820Os.51967.1.S1_at5/114+24550808..24554252bZIP transcription factor family protein
LOC_Os04g41830Os.5888.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g41830Os.49546.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g41840Os.38395.3.S1_x_at11/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.2.S1_x_at9/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.4.S1_x_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.1.S1_at8/114+24568329..24575637transposon protein, putative, Mutator sub-class
LOC_Os04g41840Os.38395.5.S1_at2/114+24568329..24575637transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18474.1.S1_at--257--8031Chr04:24549662..24549686 (25 bp)
GGAGGTCAGCGCCTACATCGTCTCC
LOC_Os04g41810
Os.18474.1.S1_at--1006--7231Chr04:24549720..24549744 (25 bp)
GTCGCCGCGTTCGAGATGAACCGCT
LOC_Os04g41810
Os.18474.1.S1_at--111--8991Chr04:24549736..24549760 (25 bp)
TGAACCGCTGCTACTCCGACGACGA
LOC_Os04g41810
Os.18474.1.S1_at--721--571Chr04:24549795..24549819 (25 bp)
ATCCATTCTCGATCGATCACGGCGA
NONE
Os.18474.1.S1_at--69--8871Chr04:24549820..24549844 (25 bp)
TGATGCGTCGTCCTCAGTCTACAGA
NONE
Os.18474.1.S1_at--677--10411Chr04:24549917..24549941 (25 bp)
TTATTCTTTTTTCCTAGCTCTCACA
NONE
Os.18474.1.S1_at--694--10871Chr04:24549953..24549977 (25 bp)
TTGGACAGCGCATTTTGAGAGGAGT
NONE
Os.18474.1.S1_at--1146--10271Chr04:24550061..24550085 (25 bp)
TTTGCCTAGCTGGACGCTCCGGTCT
NONE
Os.18474.1.S1_at--112--9291Chr04:24550078..24550102 (25 bp)
TCCGGTCTGGTTCGTGTTTGTACAT
NONE
Os.18474.1.S1_at--917--8631Chr04:24550139..24550163 (25 bp)
TGTGGTTGGTAGTTCGTTCACGTTT
NONE
Os.18474.1.S1_at--1154--9291Chr04:24550163..24550187 (25 bp)
TCCCTTCCCCTGTGTATTGATCAAT
NONE
Target Sequence 
GGAGGTCAGCGCCTACATCGTCTCCTACGGCGTCTTCGTCGCCGTCTGGGTCATCGCCGTCGCCGCGTTCGAGATGAACC
GCTGCTACTCCGACGACGACTGACCCGTCCCTCCGTCCGTCCGTCCATCTCCGATCCATTCTCGATCGATCACGGCGATG
ATGCGTCGTCCTCAGTCTACAGAGGAACAGGGACTAATGGGNCACACCNGCGTTCACGACAAGTGATGACNACGGCATAC
AGCAAAANCANCAACGATTATTATTCTTTTTTCCTAGCTCTCACACGGNTGTNGGGTTGGACAGCGCATTTTGAGAGGAG
TGTGTTTAATTGGTTGATTATTATTGAATTCTNTNGNCTNTNGGGGTATANGAGGATACNNGGCCGGGNCTNGANTGCTG
TTNCTTTGCCTAGCTGGACGCTCCGGTCTGGTTCGTGTTTGTACATTNNTGCATGGTGTCGTTGGCGTNGTTGTTGTACC
GTTGTGGTTGGTAGTTCGTTCACGTTTCCCTTCCCCTGTGTATTGATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis