Browse Element(s) Details


OsAffx.14233.1.S1_at

Description tigr:9632.m03983
TID=OsAffx.14233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4178011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41720OsAffx.15708.1.S1_at1/114+24512336..24513832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g41720OsAffx.18103.1.S1_x_at1/114+24512336..24513832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g41730NANA4+24515246..24518901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41740Os.5967.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740Os.53420.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740OsAffx.22502.1.S1_x_at4/114+24521624..24523542expressed protein
LOC_Os04g41750Os.53681.1.S1_at11/114+24525605..24527470expressed protein
LOC_Os04g41750Os.53420.1.S1_x_at1/114+24525605..24527470expressed protein
LOC_Os04g41770OsAffx.26419.1.S1_at11/114+24531688..24533968expressed protein
LOC_Os04g41780OsAffx.14233.1.S1_at11/114+24537204..24537786hypothetical protein
LOC_Os04g41790OsAffx.26420.1.S1_at11/114+24540530..24541023hypothetical protein
LOC_Os04g41800Os.56083.1.S1_at11/114+24542012..24542611expressed protein
LOC_Os04g41810OsAffx.26421.1.S1_s_at11/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.18474.1.S1_at3/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.54560.1.S1_x_at1/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41820Os.51967.1.S1_at5/114+24550808..24554252bZIP transcription factor family protein
LOC_Os04g41830Os.5888.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g41830Os.49546.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14233.1.S1_at--629--691Chr04:24537316..24537340 (25 bp)
ATGATAGGGCCACGAGTAGCAAGAA
LOC_Os04g41780
OsAffx.14233.1.S1_at--194--2431Chr04:24537339..24537363 (25 bp)
AAAACGGCGAGGATTTTGTCTCTCT
LOC_Os04g41780
OsAffx.14233.1.S1_at--822--6151Chr04:24537347..24537371 (25 bp)
GAGGATTTTGTCTCTCTGGGACGAC
LOC_Os04g41780
OsAffx.14233.1.S1_at--185--4511Chr04:24537393..24537661 (25 bp)
GCCGAGAGTGAGTTTGCCTTAATTG
LOC_Os04g41780
OsAffx.14233.1.S1_at--1035--6051Chr04:24537646..24537670 (25 bp)
GAGTTTGCCTTAATTGCGGTAGGAA
LOC_Os04g41780
OsAffx.14233.1.S1_at--296--5531Chr04:24537668..24537692 (25 bp)
GAAAACGAGGCCGATCGGTCGCCTT
LOC_Os04g41780
OsAffx.14233.1.S1_at--601--4051Chr04:24537679..24537703 (25 bp)
CGATCGGTCGCCTTCTCATGGGTGG
LOC_Os04g41780
OsAffx.14233.1.S1_at--443--7491Chr04:24537700..24537724 (25 bp)
GTGGGACAGTGGACAGTTTGCACTA
LOC_Os04g41780
OsAffx.14233.1.S1_at--769--5651Chr04:24537711..24537735 (25 bp)
GACAGTTTGCACTATAGACCAACGA
LOC_Os04g41780
OsAffx.14233.1.S1_at--334--10171Chr04:24537723..24537747 (25 bp)
TATAGACCAACGATCGGTCGCCTCA
LOC_Os04g41780
OsAffx.14233.1.S1_at--330--1891Chr04:24537732..24537756 (25 bp)
ACGATCGGTCGCCTCATGCATAGGG
LOC_Os04g41780
Target Sequence 
ATGATAGGGCCACGAGTAGCAAGAAAACGGCGAGGATTTTGTCTCTCTGGGACGACATGATCATCGATCGATCGATCGCC
GAGAGTGAGTTTGCCTTAATTGCGGTAGGAAAACGAGGCCGATCGGTCGCCTTCTCATGGGTGGGACAGTGGACAGTTTG
CACTATAGACCAACGATCGGTCGCCTCATGCATAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis