Browse Element(s) Details


Os.56083.1.S1_at

Description gb:AK109232.1
DB_XREF= gi:32994441
TID=Os.56083.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F04, full insert sequence.
FL= gb:AK109232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4180011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41730NANA4+24515246..24518901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41740Os.5967.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740Os.53420.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740OsAffx.22502.1.S1_x_at4/114+24521624..24523542expressed protein
LOC_Os04g41750Os.53681.1.S1_at11/114+24525605..24527470expressed protein
LOC_Os04g41750Os.53420.1.S1_x_at1/114+24525605..24527470expressed protein
LOC_Os04g41770OsAffx.26419.1.S1_at11/114+24531688..24533968expressed protein
LOC_Os04g41780OsAffx.14233.1.S1_at11/114+24537204..24537786hypothetical protein
LOC_Os04g41790OsAffx.26420.1.S1_at11/114+24540530..24541023hypothetical protein
LOC_Os04g41800Os.56083.1.S1_at11/114+24542012..24542611expressed protein
LOC_Os04g41810OsAffx.26421.1.S1_s_at11/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.18474.1.S1_at3/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41810Os.54560.1.S1_x_at1/114+24547171..24549764DOMON domain containing protein, expressed
LOC_Os04g41820Os.51967.1.S1_at5/114+24550808..24554252bZIP transcription factor family protein
LOC_Os04g41830Os.5888.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g41830Os.49546.1.S1_at11/114+24556569..24560485Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56083.1.S1_at--1031--7571Chr04:24542422..24542446 (25 bp)
GGGCTCGTCGGTGTTGGCCTCGCGA
LOC_Os04g41800
Os.56083.1.S1_at--435--10711Chr04:24542501..24542525 (25 bp)
TTGCGGCTGCTGTTTACCTCAGCTT
LOC_Os04g41800
Os.56083.1.S1_at--743--9051Chr04:24542508..24542532 (25 bp)
TGCTGTTTACCTCAGCTTGGGCTAG
LOC_Os04g41800
Os.56083.1.S1_at--566--9651Chr04:24542519..24542543 (25 bp)
TCAGCTTGGGCTAGGTTTATCCCAC
LOC_Os04g41800
Os.56083.1.S1_at--155--10091Chr04:24542530..24542554 (25 bp)
TAGGTTTATCCCACAGCCTGTAAAA
LOC_Os04g41800
Os.56083.1.S1_at--358--2131Chr04:24542542..24542566 (25 bp)
ACAGCCTGTAAAACTACCATTTGTA
LOC_Os04g41800
Os.56083.1.S1_at--187--2431Chr04:24542551..24542575 (25 bp)
AAAACTACCATTTGTACCATGTGAT
LOC_Os04g41800
Os.56083.1.S1_at--961--6971Chr04:24542564..24542588 (25 bp)
GTACCATGTGATTTTACCTGGAATG
LOC_Os04g41800
Os.56083.1.S1_at--814--10451Chr04:24542577..24542601 (25 bp)
TTACCTGGAATGTCAGTTCCTTCGT
LOC_Os04g41800
Os.56083.1.S1_at--55--5291Chr04:24542584..24542608 (25 bp)
GAATGTCAGTTCCTTCGTAGTAGCA
LOC_Os04g41800
Os.56083.1.S1_at--448--8731Chr04:24542587..24542611 (25 bp)
TGTCAGTTCCTTCGTAGTAGCAAAT
LOC_Os04g41800
Target Sequence 
GGGCTCGTCGGTGTTGGCCTCGCGACCCGCGCCGGGGCCGGGGTGGTAGGGAGGTTGGACGCCATCTACACCGCCGGCGT
TGCGGCTGCTGTTTACCTCAGCTTGGGCTAGGTTTATCCCACAGCCTGTAAAACTACCATTTGTACCATGTGATTTTACC
TGGAATGTCAGTTCCTTCGTAGTAGCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis