Browse Element(s) Details


OsAffx.27103.1.S1_x_at

Description tigr:9633.m02863
TID=OsAffx.27103.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3137010/11hypothetical protein
LOC_Os05g313604/11hypothetical protein
LOC_Os05g313801/11GRAS family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31320OsAffx.27101.1.S1_at10/115+18121933..18124518hypothetical protein
LOC_Os05g31320OsAffx.30485.1.S1_at1/115+18121933..18124518hypothetical protein
LOC_Os05g31330NANA5+18128706..18130556retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31340NANA5+18134048..18139714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31350NANA5+18142163..18143574hypothetical protein
LOC_Os05g31360OsAffx.27103.1.S1_x_at4/115+18147602..18148027hypothetical protein
LOC_Os05g31370OsAffx.27103.1.S1_x_at10/115+18148817..18149997hypothetical protein
LOC_Os05g31380OsAffx.27104.1.S1_at11/115+18153705..18155360GRAS family transcription factor containing protein
LOC_Os05g31380OsAffx.27559.1.S1_x_at1/115+18153705..18155360GRAS family transcription factor containing protein
LOC_Os05g31380OsAffx.27103.1.S1_x_at1/115+18153705..18155360GRAS family transcription factor containing protein
LOC_Os05g31390OsAffx.4490.1.S1_at11/115+18167076..18169404hypothetical protein
LOC_Os05g31390Os.17937.3.S1_at1/115+18167076..18169404hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27103.1.S1_x_at--204--5892Chr05:18150869..18150893 (25 bp)
GAGCGACTACCGGTGCCACCGATGG
NONE
OsAffx.27103.1.S1_x_at--82--9212Chr05:18150882..18150906 (25 bp)
TGCCACCGATGGCTGCAGCGGAGGA
NONE
OsAffx.27103.1.S1_x_at--1112--9671Chr05:18148910..18148934 (25 bp)
TCACCGGCGGCCACGAGCACAAGGA
LOC_Os05g31370
OsAffx.27103.1.S1_x_at--68--3931Chr05:18148917..18148941 (25 bp)
CGGCCACGAGCACAAGGAAGCGCTT
LOC_Os05g31370
OsAffx.27103.1.S1_x_at--241--4371Chr05:18148920..18148944 (25 bp)
CCACGAGCACAAGGAAGCGCTTGGT
LOC_Os05g31370
OsAffx.27103.1.S1_x_at--255--8051NONE
GGAAGCGCTTGGTGGGTTCGGGCAA
NONE
OsAffx.27103.1.S1_x_at--868--10831Chr05:18149553..18149572 (20 bp)
TTGGTGGGTTCGGGCAAGCTCACCA
LOC_Os05g31370
OsAffx.27103.1.S1_x_at--1053--8353Chr05:18149577..18149601 (25 bp)
GGCGGAGATCCCGAGGCTTGCCCTA
LOC_Os05g31370
OsAffx.27103.1.S1_x_at--891--1273Chr05:18149582..18149606 (25 bp)
AGATCCCGAGGCTTGCCCTAGGAGG
LOC_Os05g31370
OsAffx.27103.1.S1_x_at--1049--1913Chr05:18153997..18154021 (25 bp)
ACGGGACGTGCCAGATGCAGGTCAA
LOC_Os05g31380
OsAffx.27103.1.S1_x_at--432--652Chr05:18149854..18149878 (25 bp)
ATGCAGGTCAACGATGGGCTGAGTT
LOC_Os05g31370
Target Sequence 
GAGCGACTACCGGTGCCACCGATGGCTGCAGCGGAGGAGGATTCACCGGCGGCCACGAGCACAAGGAAGCGCTTGGTGGG
TTCGGGCAAGCTCACCATNGTGGCGGAGATCCCGAGGCTTGCCCTAGGAGGNGGAGGGGGAGNGGGAGAGCNGCTACCGG
CAGCCGGGGAGGATTCGGCNGCAGCCACNAACACGGGGAAGNGCCNGGTGGTNGGGTCCTCCTTGGCNGCCATGGTGGNG
GCNNCNGCGGGGATCCAGCCNGACGCNTTTGCCCTAGGTNGGCNNGNGGAGTANCCNGCCGGNNACGGGGAACGNGACCT
TCTCNTGGTGNGGTTCCTGCGGTCCATNGCCGCCTTCCTGGCCGACGGGACGTGCCAGATGCAGGTCAACGATGGGCTGA
GTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27103.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis