Browse Element(s) Details


OsAffx.4490.1.S1_at

Description tigr:9633.m02865
TID=OsAffx.4490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3139011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31350NANA5+18142163..18143574hypothetical protein
LOC_Os05g31360OsAffx.27103.1.S1_x_at4/115+18147602..18148027hypothetical protein
LOC_Os05g31370OsAffx.27103.1.S1_x_at10/115+18148817..18149997hypothetical protein
LOC_Os05g31380OsAffx.27104.1.S1_at11/115+18153705..18155360GRAS family transcription factor containing protein
LOC_Os05g31380OsAffx.27559.1.S1_x_at1/115+18153705..18155360GRAS family transcription factor containing protein
LOC_Os05g31380OsAffx.27103.1.S1_x_at1/115+18153705..18155360GRAS family transcription factor containing protein
LOC_Os05g31390OsAffx.4490.1.S1_at11/115+18167076..18169404hypothetical protein
LOC_Os05g31390Os.17937.3.S1_at1/115+18167076..18169404hypothetical protein
LOC_Os05g31400OsAffx.31510.1.S1_at3/115+18177056..18180713retrotransposon protein, putative, unclassified
LOC_Os05g31400Os.36476.1.S1_at1/115+18177056..18180713retrotransposon protein, putative, unclassified
LOC_Os05g31410NANA5+18182966..18184496transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4490.1.S1_at--183--6311Chr05:18167168..18167192 (25 bp)
GATGACAAACTTCCAGCTCTTCGGA
LOC_Os05g31390
OsAffx.4490.1.S1_at--121--4831Chr05:18167183..18167207 (25 bp)
GCTCTTCGGATCCACGGTGCTGGTT
LOC_Os05g31390
OsAffx.4490.1.S1_at--334--9431Chr05:18167188..18167212 (25 bp)
TCGGATCCACGGTGCTGGTTCCGGT
LOC_Os05g31390
OsAffx.4490.1.S1_at--685--2092Chr05:18169512..18169536 (25 bp)
ACAGAACGCCTCTGGTTCAGGTCAA
NONE
OsAffx.4490.1.S1_at--411--2612Chr05:18169516..18169540 (25 bp)
AACGCCTCTGGTTCAGGTCAAGGAC
NONE
OsAffx.4490.1.S1_at--519--3772Chr05:18167300..18167324 (25 bp)
CTCTGGTTCAGGTCAAGGACAAGGT
LOC_Os05g31390
OsAffx.4490.1.S1_at--855--3211Chr05:18167319..18167343 (25 bp)
CAAGGTGGCAACATGTTCTTGTCCT
LOC_Os05g31390
OsAffx.4490.1.S1_at--376--7691Chr05:18168952..18168976 (25 bp)
GGGTTTCTCCTCATTGCAGATCTGT
LOC_Os05g31390
OsAffx.4490.1.S1_at--769--9491Chr05:18168957..18168981 (25 bp)
TCTCCTCATTGCAGATCTGTGTTAA
LOC_Os05g31390
OsAffx.4490.1.S1_at--980--1251Chr05:18169277..18169301 (25 bp)
AGATTTATTTAGCTGCAATGGAGAA
LOC_Os05g31390
OsAffx.4490.1.S1_at--520--9991Chr05:18169286..18169310 (25 bp)
TAGCTGCAATGGAGAAGGGCTCGTC
LOC_Os05g31390
Target Sequence 
GATGACAAACTTCCAGCTCTTCGGATCCACGGTGCTGGTTCCGGTGGCTTCCATGGCGACGGCTATTGCTCCGGCAGCTA
TGGCAGCAGCCGATAATGGTGGACATGGATCCTCGTCGGCGTCACAGAACGCCTCTGGTTCAGGTCAAGGACAAGGTGGC
AACATGTTCTTGTCCTTGCAACTGAGGCCGCTCGGCTCAACGCCATGGGGTTTCTCCTCATTGCAGATCTGTGTTAAGAT
TTATTTAGCTGCAATGGAGAAGGGCTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis