Browse Element(s) Details


OsAffx.27104.1.S1_at

Description tigr:9633.m02864
TID=OsAffx.27104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GRAS family transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3138011/11GRAS family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31330NANA5+18128706..18130556retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31340NANA5+18134048..18139714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31350NANA5+18142163..18143574hypothetical protein
LOC_Os05g31360OsAffx.27103.1.S1_x_at4/115+18147602..18148027hypothetical protein
LOC_Os05g31370OsAffx.27103.1.S1_x_at10/115+18148817..18149997hypothetical protein
LOC_Os05g31380OsAffx.27104.1.S1_at11/115+18153705..18155360GRAS family transcription factor containing protein
LOC_Os05g31380OsAffx.27559.1.S1_x_at1/115+18153705..18155360GRAS family transcription factor containing protein
LOC_Os05g31380OsAffx.27103.1.S1_x_at1/115+18153705..18155360GRAS family transcription factor containing protein
LOC_Os05g31390OsAffx.4490.1.S1_at11/115+18167076..18169404hypothetical protein
LOC_Os05g31390Os.17937.3.S1_at1/115+18167076..18169404hypothetical protein
LOC_Os05g31400OsAffx.31510.1.S1_at3/115+18177056..18180713retrotransposon protein, putative, unclassified
LOC_Os05g31400Os.36476.1.S1_at1/115+18177056..18180713retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27104.1.S1_at--423--8971Chr05:18154765..18154789 (25 bp)
TGAACCCGAAGCTGGTGGTCCTGAC
LOC_Os05g31380
OsAffx.27104.1.S1_at--611--3951Chr05:18154789..18154813 (25 bp)
CGGAGAACGAGGCCGACCACAACGT
LOC_Os05g31380
OsAffx.27104.1.S1_at--144--4091Chr05:18154802..18154826 (25 bp)
CGACCACAACGTCGCGGAGCTCGGG
LOC_Os05g31380
OsAffx.27104.1.S1_at--360--1851Chr05:18154915..18154939 (25 bp)
ACGAACGCGCGTGCGTCGAGCGGTG
LOC_Os05g31380
OsAffx.27104.1.S1_at--201--5111Chr05:18155080..18155104 (25 bp)
GCACGGAGACGCTCGCGCAGCAGAT
LOC_Os05g31380
OsAffx.27104.1.S1_at--934--10651Chr05:18155169..18155193 (25 bp)
TTCCCCGTGATCTGCTGGTGCGACG
LOC_Os05g31380
OsAffx.27104.1.S1_at--295--8851Chr05:18155176..18155200 (25 bp)
TGATCTGCTGGTGCGACGTGCCCGT
LOC_Os05g31380
OsAffx.27104.1.S1_at--664--5751Chr05:18155190..18155214 (25 bp)
GACGTGCCCGTCTTCTCGGTCTCGA
LOC_Os05g31380
OsAffx.27104.1.S1_at--838--6731Chr05:18155199..18155223 (25 bp)
GTCTTCTCGGTCTCGACGTGGACCG
LOC_Os05g31380
OsAffx.27104.1.S1_at--394--6171Chr05:18155225..18155249 (25 bp)
GAGGAGGGTCCTTGTGCCGGCGCCA
LOC_Os05g31380
OsAffx.27104.1.S1_at--854--7731Chr05:18155274..18155298 (25 bp)
GGTGGTGCTGGTCCATCGGGCTCAG
LOC_Os05g31380
Target Sequence 
TGAACCCGAAGCTGGTGGTCCTGACGGAGAACGAGGCCGACCACAACGTCGCGGAGCTCGGGGCGCGCGTCTGGAACGCG
CTCAACTACTACGCGGCGCTGTTCGACGCCCTGGAGGCGAGCTCCACCCCGCCGGCGGCCGTGCCGCCGCACGAACGCGC
GTGCGTCGAGCGGTGGGTGCTCGGCGAGGAGATCAAGGACATCGTCGTCCGTGAGGGCACGGGGCGGCGGGAGAGGCACG
AGACGCTGGGGCGCTGGGCGGAGCGGATGGTCGCCGCCGGCTTCTCCCCCGTGACGGCGGCCAGGGCGCTGGCGAGCACG
GAGACGCTCGCGCAGCAGATGGTGGCGGCGGGCGGGGGCGGTGCCGGCGCCGGGGTGCTCAGGGCGGCGCACGGCGGCGG
GTGCTTCCCCGTGATCTGCTGGTGCGACGTGCCCGTCTTCTCGGTCTCGACGTGGACCGCGAGGAGGGTCCTTGTGCCGG
CGCCACCGCTGTGGCCACCGGCGGCGGCTGGTGGTGCTGGTCCATCGGGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis