Browse Element(s) Details


OsAffx.27861.1.S1_at

Description tigr:9634.m02801
TID=OsAffx.27861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2924011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29200Os.28943.1.S1_x_at4/116+16664050..16667053retrotransposon protein, putative, unclassified
LOC_Os06g29210NANA6+16667675..16673638retrotransposon protein, putative, unclassified
LOC_Os06g29220Os.14187.1.S1_at10/116+16675495..16682026Formate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g29230OsAffx.15659.1.S1_at11/116+16683094..16683462hypothetical protein
LOC_Os06g29240OsAffx.27861.1.S1_at11/116+16686153..16686944hypothetical protein
LOC_Os06g29240OsAffx.27101.1.S1_at1/116+16686153..16686944hypothetical protein
LOC_Os06g29250NANA6+16692824..16693456expressed protein
LOC_Os06g29260OsAffx.28454.1.S1_s_at11/116+16701260..16702064hypothetical protein
LOC_Os06g29260OsAffx.28454.1.S1_at9/116+16701260..16702064hypothetical protein
LOC_Os06g29260OsAffx.28454.2.S1_at1/116+16701260..16702064hypothetical protein
LOC_Os06g29270OsAffx.940.1.S1_x_at1/116+16705403..16712256retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27861.1.S1_at--896--4131Chr06:16686185..16686209 (25 bp)
CGCGGTACTGACGACTTTTGTGGAC
LOC_Os06g29240
OsAffx.27861.1.S1_at--956--4091Chr06:16686196..16686220 (25 bp)
CGACTTTTGTGGACCGATGGAGACC
LOC_Os06g29240
OsAffx.27861.1.S1_at--120--6251Chr06:16686211..16686235 (25 bp)
GATGGAGACCAGAAGCTCACACTTT
LOC_Os06g29240
OsAffx.27861.1.S1_at--1033--9691Chr06:16686227..16686251 (25 bp)
TCACACTTTCCACCTTTCTAGCGGG
LOC_Os06g29240
OsAffx.27861.1.S1_at--316--7371Chr06:16686261..16686285 (25 bp)
GTGACACTTGAGGACAATGCCATTA
LOC_Os06g29240
OsAffx.27861.1.S1_at--575--3031Chr06:16686276..16686300 (25 bp)
AATGCCATTATCCTGGTTCATCCTT
LOC_Os06g29240
OsAffx.27861.1.S1_at--871--3371Chr06:16686317..16686339 (23 bp)
CACCAGTGACACTAGTTGCGGTACT
LOC_Os06g29240
OsAffx.27861.1.S1_at--1130--10091Chr06:16686810..16686830 (21 bp)
TTGCGGTACTAAACCGCCAAAGTTG
LOC_Os06g29240
OsAffx.27861.1.S1_at--880--8011Chr06:16686831..16686855 (25 bp)
GGAGGAAATCCAAACTACAGTGAAG
LOC_Os06g29240
OsAffx.27861.1.S1_at--688--1091Chr06:16686874..16686898 (25 bp)
AGTGTTGGGCTCTAGAACTCCATTT
LOC_Os06g29240
OsAffx.27861.1.S1_at--1111--7571Chr06:16686880..16686904 (25 bp)
GGGCTCTAGAACTCCATTTTAACAT
LOC_Os06g29240
Target Sequence 
CGCGGTACTGACGACTTTTGTGGACCGATGGAGACCAGAAGCTCACACTTTCCACCTTTCTAGCGGGGAGCTGATGGTGA
CACTTGAGGACAATGCCATTATCCTGGTTCATCCTTCACGGGGTCAGGCAGTCACCAGTGACACTAGTTGCGGTACTAAA
CCGCCAAAGTTGGGAGGAAATCCAAACTACAGTGAAGGAAAATTTCATCCATACAAGTGTTGGGCTCTAGAACTCCATTT
TAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis