Browse Element(s) Details


OsAffx.15659.1.S1_at

Description tigr:9634.m02800
TID=OsAffx.15659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2923011/11hypothetical protein
LOC_Os03g318392/11Transposable element protein, putative, MuDR, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29200Os.28943.1.S1_x_at4/116+16664050..16667053retrotransposon protein, putative, unclassified
LOC_Os06g29210NANA6+16667675..16673638retrotransposon protein, putative, unclassified
LOC_Os06g29220Os.14187.1.S1_at10/116+16675495..16682026Formate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g29230OsAffx.15659.1.S1_at11/116+16683094..16683462hypothetical protein
LOC_Os06g29240OsAffx.27861.1.S1_at11/116+16686153..16686944hypothetical protein
LOC_Os06g29240OsAffx.27101.1.S1_at1/116+16686153..16686944hypothetical protein
LOC_Os06g29250NANA6+16692824..16693456expressed protein
LOC_Os06g29260OsAffx.28454.1.S1_s_at11/116+16701260..16702064hypothetical protein
LOC_Os06g29260OsAffx.28454.1.S1_at9/116+16701260..16702064hypothetical protein
LOC_Os06g29260OsAffx.28454.2.S1_at1/116+16701260..16702064hypothetical protein
LOC_Os06g29270OsAffx.940.1.S1_x_at1/116+16705403..16712256retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15659.1.S1_at--208--6472Chr06:16683143..16683167 (25 bp)
GATACGATGTGGGTGTCGGTCCCAT
LOC_Os06g29230
OsAffx.15659.1.S1_at--666--792Chr06:16683149..16683173 (25 bp)
ATGTGGGTGTCGGTCCCATGTCGCA
LOC_Os06g29230
OsAffx.15659.1.S1_at--1078--7692Chr06:16683154..16683178 (25 bp)
GGTGTCGGTCCCATGTCGCATAAGT
LOC_Os06g29230
OsAffx.15659.1.S1_at--738--7192Chr06:16683157..16683181 (25 bp)
GTCGGTCCCATGTCGCATAAGTTTA
LOC_Os06g29230
OsAffx.15659.1.S1_at--1107--7793Chr06:16683160..16683184 (25 bp)
GGTCCCATGTCGCATAAGTTTATGT
LOC_Os06g29230
OsAffx.15659.1.S1_at--120--7253Chr06:16683161..16683185 (25 bp)
GTCCCATGTCGCATAAGTTTATGTT
LOC_Os06g29230
OsAffx.15659.1.S1_at--450--1251Chr06:16683222..16683246 (25 bp)
AGATATAGCATTGGGATCACAGTTC
LOC_Os06g29230
OsAffx.15659.1.S1_at--960--1531Chr06:16683228..16683252 (25 bp)
AGCATTGGGATCACAGTTCAAATCG
LOC_Os06g29230
OsAffx.15659.1.S1_at--553--1371Chr06:16683276..16683300 (25 bp)
AGAGCGCAAGGAATCGAAGAACGAT
LOC_Os06g29230
OsAffx.15659.1.S1_at--832--2731Chr06:16683292..16683316 (25 bp)
AAGAACGATGTGTTTGTAGCGAATC
LOC_Os06g29230
OsAffx.15659.1.S1_at--258--6271Chr06:16683298..16683322 (25 bp)
GATGTGTTTGTAGCGAATCGAAAGA
LOC_Os06g29230
Target Sequence 
GATACGATGTGGGTGTCGGTCCCATGTCGCATAAGTTTATGTTAGACTTGAATGGAGAGGTGGAATGGGAAACATATATA
GATATAGCATTGGGATCACAGTTCAAATCGCTTGAGGTATTTGCTTGGAAGAAAGAGCGCAAGGAATCGAAGAACGATGT
GTTTGTAGCGAATCGAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis