Browse Element(s) Details


OsAffx.25502.2.S1_at

Description tigr:9631.m04126
TID=OsAffx.25502.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4285011/11hypothetical protein
LOC_Os06g468504/11retrotransposon protein, putative, unclassified
LOC_Os06g293001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42830Os.5343.1.S1_at10/113+23824483..23830601MATE efflux family protein, expressed
LOC_Os03g42840Os.9954.1.S1_at11/113+23843050..23849762Calcineurin B-like protein 3, putative, expressed
LOC_Os03g42850OsAffx.25502.2.S1_at11/113+23853150..23854173hypothetical protein
LOC_Os03g42860NANA3+23854442..23854834pentatricopeptide, putative
LOC_Os03g42870OsAffx.13313.1.S1_at11/113+23856174..23856485hypothetical protein
LOC_Os03g42880Os.27341.1.S1_at11/113+23861951..23867501expressed protein
LOC_Os03g42890OsAffx.25503.1.S1_at11/113+23869970..23871596hypothetical protein
LOC_Os03g42890OsAffx.5954.2.S1_at1/113+23869970..23871596hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25502.2.S1_at--702--4213Chr03:23853688..23853712 (25 bp)
CCGCCGGCGAGTTTGTCCTGTGGAG
LOC_Os03g42850
OsAffx.25502.2.S1_at--605--10732Chr03:23853700..23853724 (25 bp)
TTGTCCTGTGGAGCGGGTAGCGGCA
LOC_Os03g42850
OsAffx.25502.2.S1_at--750--7831Chr03:23853715..23853739 (25 bp)
GGTAGCGGCAACTGCGCACCAAGAG
LOC_Os03g42850
OsAffx.25502.2.S1_at--793--5151Chr03:23853722..23853746 (25 bp)
GCAACTGCGCACCAAGAGCGGCCGA
LOC_Os03g42850
OsAffx.25502.2.S1_at--1090--6992Chr03:23853849..23853873 (25 bp)
GTACGTGTTCGACATCAGCACCGAA
LOC_Os03g42850
OsAffx.25502.2.S1_at--582--6712Chr03:23853855..23853879 (25 bp)
GTTCGACATCAGCACCGAAAACCAT
LOC_Os03g42850
OsAffx.25502.2.S1_at--52--3411Chr03:23853864..23853888 (25 bp)
CAGCACCGAAAACCATTCGACGCGT
LOC_Os03g42850
OsAffx.25502.2.S1_at--77--4131Chr03:23853884..23853908 (25 bp)
CGCGTACGTGTTCGATTAACGCCTA
LOC_Os03g42850
OsAffx.25502.2.S1_at--943--7411Chr03:23853891..23853915 (25 bp)
GTGTTCGATTAACGCCTATACTCAG
LOC_Os03g42850
OsAffx.25502.2.S1_at--744--10491Chr03:23853899..23853923 (25 bp)
TTAACGCCTATACTCAGCCGGAGGA
LOC_Os03g42850
OsAffx.25502.2.S1_at--744--2191Chr03:23853989..23854013 (25 bp)
ACAAGAACGTGGAGGCACTCCCGGA
LOC_Os03g42850
Target Sequence 
CCGCCGGCGAGTTTGTCCTGTGGAGCGGGTAGCGGCAACTGCGCACCAAGAGCGGCCGACGGCGCGGAGGCGGACGCGGT
CGGGGAGGGAGCGCGGGGGCGGCAGCGTGGAGCGCTAGCAGGAAGCGGCTGCGCGCGTGGCCGGCGACGGCCATTCGACG
CGTACGTGTTCGACATCAGCACCGAAAACCATTCGACGCGTACGTGTTCGATTAACGCCTATACTCAGCCGGAGGAGGAG
CAGAAGGGCGTCCACGGCGGCGGTGGCGTCGCCGGAGCGCAGGTGGAGGCGGCGCTGAACCACAAGAACGTGGAGGCACT
CCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25502.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis