Browse Element(s) Details


Os.27341.1.S1_at

Description gb:AK106686.1
DB_XREF= gi:32991895
TID=Os.27341.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C02, full insert sequence.
FL= gb:AK106686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4288011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42840Os.9954.1.S1_at11/113+23843050..23849762Calcineurin B-like protein 3, putative, expressed
LOC_Os03g42850OsAffx.25502.2.S1_at11/113+23853150..23854173hypothetical protein
LOC_Os03g42860NANA3+23854442..23854834pentatricopeptide, putative
LOC_Os03g42870OsAffx.13313.1.S1_at11/113+23856174..23856485hypothetical protein
LOC_Os03g42880Os.27341.1.S1_at11/113+23861951..23867501expressed protein
LOC_Os03g42890OsAffx.25503.1.S1_at11/113+23869970..23871596hypothetical protein
LOC_Os03g42890OsAffx.5954.2.S1_at1/113+23869970..23871596hypothetical protein
LOC_Os03g42900Os.13727.1.S1_at11/113+23879913..23888496KH domain containing protein, expressed
LOC_Os03g42910OsAffx.25504.1.S1_at11/113+23891739..23892293hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27341.1.S1_at--974--1131Chr03:23865791..23865980 (25 bp)
AGTCCCTATTCTGGGTTTAGTGGAG
LOC_Os03g42880
Os.27341.1.S1_at--852--691Chr03:23865984..23866008 (25 bp)
ATGAGCTGTTTCAAGTGCCCGAAGT
LOC_Os03g42880
Os.27341.1.S1_at--323--7391Chr03:23867041..23867062 (22 bp)
GTGAGATACCTCTTGAAATCGACAT
LOC_Os03g42880
Os.27341.1.S1_at--66--391Chr03:23867102..23867126 (25 bp)
ATCACCAGATTCTGCATCGGCACAG
LOC_Os03g42880
Os.27341.1.S1_at--139--2131Chr03:23867123..23867147 (25 bp)
ACAGGCCTACATACAGGTCGCTGAG
LOC_Os03g42880
Os.27341.1.S1_at--852--6251Chr03:23867189..23867213 (25 bp)
GATGGGACCAGAAATCTTGCTTTGA
LOC_Os03g42880
Os.27341.1.S1_at--81--10731Chr03:23867205..23867229 (25 bp)
TTGCTTTGAGAGTTCATACCGCCCC
LOC_Os03g42880
Os.27341.1.S1_at--305--10631Chr03:23867258..23867282 (25 bp)
TTCGAGCTGCATCCCAGTAGCTGAT
LOC_Os03g42880
Os.27341.1.S1_at--376--6971Chr03:23867274..23867298 (25 bp)
GTAGCTGATAGCCTTTCACTCAAAA
LOC_Os03g42880
Os.27341.1.S1_at--237--211Chr03:23867311..23867335 (25 bp)
ATTTGGTAACATCCTTGTCAGCCCC
LOC_Os03g42880
Os.27341.1.S1_at--173--7111Chr03:23867387..23867411 (25 bp)
GTCACCCATGTACTTTTGCCAAATT
LOC_Os03g42880
Target Sequence 
AGTCCCTATTCTGGGTTTAGTGGAGAATATGAGCTGTTTCAAGTGCCCGAAGTGTGGTGAGAAGTCTTACATTTTTGGGG
AAGGTGGAGGTCAGAGAACTGCAGAAGAAATGGATATGAAATTAATCGGTGAGATACCTCTTGAAATCGACATCAGAACA
GGTTCAGATGAAGGTACTCCAATTGTGATATCATCACCAGATTCTGCATCGGCACAGGCCTACATACAGGTCGCTGAGAA
GGTGATCCACAGGCTGAAGGAGTTAGCCGAGGAACGACAGATGGGACCAGAAATCTTGCTTTGAGAGTTCATACCGCCCC
TGTAGAACTGTTCCCGTTCCTCTTCTGGTTCGAGCTGCATCCCAGTAGCTGATAGCCTTTCACTCAAAATAAGAAGTAAA
CATTTGGTAACATCCTTGTCAGCCCCACAAAGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAAAAAACATCCTTGTC
ACCCATGTACTTTTGCCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis