Browse Element(s) Details


Os.9954.1.S1_at

Description gb:AK112092.1
DB_XREF= gi:37988755
TID=Os.9954.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B01, full insert sequence.
FL= gb:AK111916.1 gb:AK112092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4284011/11Calcineurin B-like protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42830Os.5343.1.S1_at10/113+23824483..23830601MATE efflux family protein, expressed
LOC_Os03g42840Os.9954.1.S1_at11/113+23843050..23849762Calcineurin B-like protein 3, putative, expressed
LOC_Os03g42850OsAffx.25502.2.S1_at11/113+23853150..23854173hypothetical protein
LOC_Os03g42860NANA3+23854442..23854834pentatricopeptide, putative
LOC_Os03g42870OsAffx.13313.1.S1_at11/113+23856174..23856485hypothetical protein
LOC_Os03g42880Os.27341.1.S1_at11/113+23861951..23867501expressed protein
LOC_Os03g42890OsAffx.25503.1.S1_at11/113+23869970..23871596hypothetical protein
LOC_Os03g42890OsAffx.5954.2.S1_at1/113+23869970..23871596hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0006970biological_processresponse to osmotic stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0019722biological_processcalcium-mediated signaling
GO:0005886cellular_componentplasma membrane
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9954.1.S1_at--634--5291Chr03:23847738..23847762 (25 bp)
GAATGGCGCAATCTAGTTCTCAGAC
LOC_Os03g42840
Os.9954.1.S1_at--108--8711Chr03:23849277..23849301 (25 bp)
TGTCTTCCATTCTCAAGTCGACGAT
LOC_Os03g42840
Os.9954.1.S1_at--418--8511Chr03:23849331..23849355 (25 bp)
TGGAATGCCAGAAGACAGTCTCGTT
LOC_Os03g42840
Os.9954.1.S1_at--875--5651Chr03:23849344..23849368 (25 bp)
GACAGTCTCGTTGCTTTTGAGGCTT
LOC_Os03g42840
Os.9954.1.S1_at--1023--6931Chr03:23849377..23849401 (25 bp)
GTAGTTTTTGGTTCAGCACTTCATC
LOC_Os03g42840
Os.9954.1.S1_at--123--10331Chr03:23849481..23849505 (25 bp)
TTTCTTGCTTTTAGCCGGTGTGTGA
LOC_Os03g42840
Os.9954.1.S1_at--1159--1671Chr03:23849493..23849517 (25 bp)
AGCCGGTGTGTGATATCTGTCTCAA
LOC_Os03g42840
Os.9954.1.S1_at--2--471Chr03:23849507..23849531 (25 bp)
ATCTGTCTCAAGTTTCTTTTCCCTA
LOC_Os03g42840
Os.9954.1.S1_at--274--10251Chr03:23849586..23849610 (25 bp)
TTTGAAGAAACCTCCGACCGTGTAT
LOC_Os03g42840
Os.9954.1.S1_at--342--5831Chr03:23849601..23849625 (25 bp)
GACCGTGTATAAAGCTTCCTTCTAG
LOC_Os03g42840
Os.9954.1.S1_at--561--5291Chr03:23849676..23849700 (25 bp)
GAATGGCTCAGGAATTCCCTAGTTG
LOC_Os03g42840
Target Sequence 
GAATGGCGCAATCTAGTTCTCAGACATCCTTCTTTACTGAAAAACATGACACTCCAATATCTCAAGGACATCACAACTAC
ATTTCCAAGCTTTGTCTTCCATTCTCAAGTCGACGATACTTGAAATNCTGAGAATTTCCCCCTCCAATGGAATGCCAGAA
GACAGTCTCGTTGCTTTTGAGGCTTTGCAATGAGTAGTTTTTGGTTCAGCACTTCATCTGAAGCCATAAAGTTCCAGAGA
TGATCACATATTGCAGTGGAGAAATCAAACATTTCCGTATTGTTAATAATAGTTCTTTTTCTTGCTTTTAGCCGGTGTGT
GATATCTGTCTCAAGTTTCTTTTCCCTATTTTCTGTTTTTTTTTTCTTTCTGTTGGTTTATTGGTTAGTAGTCGATCTAA
TTGTTTGAAGAAACCTCCGACCGTGTATAAAGCTTCCTTCTAGTGAACTGTATTTAAGTCAGGAAGTTTTCTATTGTATA
TTGCAGATTAATTGAATGGCTCAGGAATTCCCTAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis