Browse Element(s) Details


Os.5343.1.S1_at

Description gb:AK068484.1
DB_XREF= gi:32978502
TID=Os.5343.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153I24, full insert sequence.
FL= gb:AK068484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4283010/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42810OsAffx.13312.1.S1_s_at11/113+23803324..23806384Type I inositol-1,4,5-trisphosphate 5-phosphatase 11, putative, expressed
LOC_Os03g42820Os.8892.1.S1_at11/113+23809481..23816235LIM domain-containing protein, putative, expressed
LOC_Os03g42830Os.5343.1.S1_at10/113+23824483..23830601MATE efflux family protein, expressed
LOC_Os03g42840Os.9954.1.S1_at11/113+23843050..23849762Calcineurin B-like protein 3, putative, expressed
LOC_Os03g42850OsAffx.25502.2.S1_at11/113+23853150..23854173hypothetical protein
LOC_Os03g42860NANA3+23854442..23854834pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0009835biological_processripening
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5343.1.S1_at--1147--9891Chr03:23825307..23825331 (25 bp)
TACTACCTGGTTGGCATCCCACTGG
LOC_Os03g42830
Os.5343.1.S1_at--896--1951Chr03:23825287..23825311 (25 bp)
ACTGGGTGTCCTCTTTGGCTTCAAG
LOC_Os03g42830
Os.5343.1.S1_at--660--8631Chr03:23825122..23825146 (25 bp)
TGGGTATGTCACTTGGCACGCTGCT
LOC_Os03g42830
Os.5343.1.S1_at--407--10531Chr03:23825098..23825122 (25 bp)
TTCAGACAGCCATACTGGCCTTCAT
LOC_Os03g42830
Os.5343.1.S1_at--810--8451Chr03:23825083..23825107 (25 bp)
TGGCCTTCATTTCCTTCAGGACAAA
LOC_Os03g42830
Os.5343.1.S1_at--457--5811Chr03:23824836..23824860 (25 bp)
GACGCCGACGGCTGATGATCATAAC
LOC_Os03g42830
Os.5343.1.S1_at--230--271Chr03:23824642..23824666 (25 bp)
ATAGGTGCTAAACCTCAGCTTGAAT
LOC_Os03g42830
Os.5343.1.S1_at--917--4911Chr03:23824625..23824649 (25 bp)
GCTTGAATTTCGTTTTGTCTTGCCT
LOC_Os03g42830
Os.5343.1.S1_at--415--1971Chr03:23824549..23824573 (25 bp)
ACTGAGGTTCATTTTCACATTGAGG
LOC_Os03g42830
Os.5343.1.S1_at--348--6151Chr03:23824528..23824552 (25 bp)
GAGGTGATTTTTTGAGCTCCGTAAT
LOC_Os03g42830
Os.5343.1.S1_at--625--5611Chr03:23824483..23824507 (25 bp)
GACAAGGTATCCCACTAGATCAAGG
NONE
Target Sequence 
TACTACCTGGTTGGCATCCCACTGGGTGTCCTCTTTGGCTTCAAGCTGAAGCTCGATGCAATGGGGATTTGGGTGGGTAT
GTCACTTGGCACGCTGCTTCAGACAGCCATACTGGCCTTCATTTCCTTCAGGACAAAANGGGAGAGACAGGCCATGATGG
CTGAGGAGAGGATCAGAGAGTGGGGAGGGAGGAACGACGACGCGCTGCCGTCCACGACGACGCCGACGGCTGATGATCAT
AACGTAGATAGATGATGATGAGATCAGATGGTTAATTATTCCTTCAAATTAATTAAACTTGCAGTTAAATAGTGGAGTTA
TTTATACACACATCACAAAAGCTGAGTAGGCTTGTAGAATTATTTTGTACAGATTCATATATGGTCTATGTAGAGAGAGA
AGCTCGGTTTTTATAGGTGCTAAACCTCAGCTTGAATTTCGTTTTGTCTTGCCTTCCTTTTCTTCCATTTTGGTTGGAAG
ATGATCAGCTGGAAATTATTGTACTACTGAGGTTCATTTTCACATTGAGGTGATTTTTTGAGCTCCGTAATTATAAAACG
TCTCTTTATTTGACAAGGTATCCCACTAGATCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis