Browse Element(s) Details


OsAffx.13313.1.S1_at

Description tigr:9631.m04128
TID=OsAffx.13313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4287011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42840Os.9954.1.S1_at11/113+23843050..23849762Calcineurin B-like protein 3, putative, expressed
LOC_Os03g42850OsAffx.25502.2.S1_at11/113+23853150..23854173hypothetical protein
LOC_Os03g42860NANA3+23854442..23854834pentatricopeptide, putative
LOC_Os03g42870OsAffx.13313.1.S1_at11/113+23856174..23856485hypothetical protein
LOC_Os03g42880Os.27341.1.S1_at11/113+23861951..23867501expressed protein
LOC_Os03g42890OsAffx.25503.1.S1_at11/113+23869970..23871596hypothetical protein
LOC_Os03g42890OsAffx.5954.2.S1_at1/113+23869970..23871596hypothetical protein
LOC_Os03g42900Os.13727.1.S1_at11/113+23879913..23888496KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13313.1.S1_at--826--3611Chr03:23856429..23856453 (25 bp)
CTTGGTGATGGCGATAATGCTAGTG
LOC_Os03g42870
OsAffx.13313.1.S1_at--451--8371Chr03:23856420..23856444 (25 bp)
GGCGATAATGCTAGTGATCTTGTTA
LOC_Os03g42870
OsAffx.13313.1.S1_at--477--10071Chr03:23856409..23856433 (25 bp)
TAGTGATCTTGTTAGCCACGGCGGC
LOC_Os03g42870
OsAffx.13313.1.S1_at--754--7391Chr03:23856407..23856431 (25 bp)
GTGATCTTGTTAGCCACGGCGGCGC
LOC_Os03g42870
OsAffx.13313.1.S1_at--1116--971Chr03:23856331..23856355 (25 bp)
AGGAGGCCGGTCGTCAGGCTTCTCC
LOC_Os03g42870
OsAffx.13313.1.S1_at--194--931Chr03:23856316..23856340 (25 bp)
AGGCTTCTCCTTCTACGTTGCTGAT
LOC_Os03g42870
OsAffx.13313.1.S1_at--510--4911Chr03:23856314..23856338 (25 bp)
GCTTCTCCTTCTACGTTGCTGATCG
LOC_Os03g42870
OsAffx.13313.1.S1_at--877--10571Chr03:23856306..23856330 (25 bp)
TTCTACGTTGCTGATCGCCGTCGGC
LOC_Os03g42870
OsAffx.13313.1.S1_at--777--4591Chr03:23856223..23856247 (25 bp)
GCGACGACGTCGTAGGAGAGTCCAA
LOC_Os03g42870
OsAffx.13313.1.S1_at--937--1871Chr03:23856217..23856241 (25 bp)
ACGTCGTAGGAGAGTCCAAAGGCTC
LOC_Os03g42870
OsAffx.13313.1.S1_at--1096--971Chr03:23856210..23856234 (25 bp)
AGGAGAGTCCAAAGGCTCTGGACCT
LOC_Os03g42870
Target Sequence 
CTTGGTGATGGCGATAATGCTAGTGATCTTGTTAGCCACGGCGGCGCCGGCGTACTGCCCCGGCGGCGTTGTGGCGGCGA
GGCCGCTGCACGACGACGAGGAGGCCGGTCGTCAGGCTTCTCCTTCTACGTTGCTGATCGCCGTCGGCCATGATCAGCAG
CAGCACGGTGGCCGCCGACGACGGCTGGTGGTGGCGTCGCCGGACGGCGACGACGTCGTAGGAGAGTCCAAAGGCTCTGG
ACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis