Browse Element(s) Details


Os.40028.1.A1_at

Description gb:CF327883
DB_XREF= gi:33804014
DB_XREF=NACL--02-I19.g1
CLONE=NACL--02-I19
TID=Os.40028.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40028 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g151502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g225801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15120NANA7+8673376..8674786transposon protein, putative, unclassified
LOC_Os07g15130OsAffx.28454.1.S1_s_at11/117+8679898..8681132hypothetical protein
LOC_Os07g15130OsAffx.28454.1.S1_at8/117+8679898..8681132hypothetical protein
LOC_Os07g15130OsAffx.28454.2.S1_at8/117+8679898..8681132hypothetical protein
LOC_Os07g15140Os.47463.1.S1_x_at6/117+8688022..8691254transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15140Os.14491.2.S1_x_at4/117+8688022..8691254transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150Os.27026.1.A1_x_at3/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150Os.40028.1.A1_at2/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150Os.27037.1.A1_at1/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150OsAffx.16407.2.S1_x_at1/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15160Os.51229.1.S1_at10/117+8700816..8704304expressed protein
LOC_Os07g15160Os.50367.1.A1_at6/117+8700816..8704304expressed protein
LOC_Os07g15160Os.52566.1.S1_at1/117+8700816..8704304expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40028.1.A1_at--420--2651Chr02:13467336..13467359 (24 bp)
AACCACATTTGTCGGCTATTAATGA
LOC_Os02g22580
Os.40028.1.A1_at--1162--7351Chr02:13467166..13467190 (25 bp)
GTGAAAGCAATATTCCTAACGGCGC
NONE
Os.40028.1.A1_at--352--5191Chr02:13467160..13467184 (25 bp)
GCAATATTCCTAACGGCGCACAAGA
NONE
Os.40028.1.A1_at--633--3711Chr02:13467151..13467175 (25 bp)
CTAACGGCGCACAAGATTTTCTGAA
NONE
Os.40028.1.A1_at--507--8391Chr02:13467146..13467170 (25 bp)
GGCGCACAAGATTTTCTGAAGTGTA
NONE
Os.40028.1.A1_at--576--3015Chr12:14537648..14537672 (25 bp)
AATGCACAACATTAGGGTAGTTATT
NONE
Os.40028.1.A1_at--563--571Chr02:13467058..13467082 (25 bp)
ATCCATTAGAATTACCGTATCTAGA
NONE
Os.40028.1.A1_at--93--3151Chr02:13467049..13467073 (25 bp)
AATTACCGTATCTAGAAATGCTGGA
NONE
Os.40028.1.A1_at--743--5673Chr08:10557215..10557235 (21 bp)
GACATCATCAAATTTTCATAGCTGT
NONE
Os.40028.1.A1_at--507--3131Chr02:13466980..13467004 (25 bp)
AATTTTCATAGCTGTCTTCTATCTA
NONE
Os.40028.1.A1_at--180--10551Chr02:13466976..13467000 (25 bp)
TTCATAGCTGTCTTCTATCTATGTT
NONE
Target Sequence 
AACCACATTTGTCGGCTATTAATGATAGTGACGAGCTAANGGAAACTTTTTTTTGCTAAATCTACTGATGTACCAACAAA
ATGAGTGTGAAAGCAATATTCCTAACGGCGCACAAGATTTTCTGAAGTGTATAAAAAATGCACAACATTAGGGTAGTTAT
TTAACTATATGGAGTGATTTAATTTGAGGTGATCATCCATTAGAATTACCGTATCTAGAAATGCTGGATGTTCCATATTT
TTTGCTTGTGCTTTATTTGTATGACATCATCAAATTTTCATAGCTGTCTTCTATCTATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40028.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis