Browse Element(s) Details


Os.50939.1.S1_at

Description gb:AK059590.1
DB_XREF= gi:32969608
TID=Os.50939.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D01, full insert sequence.
FL= gb:AK059590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g678709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67820Os.53052.1.S1_at9/111+39738039..39739911Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g67830Os.51723.1.S1_at11/111+39741652..39745466B3 DNA binding domain containing protein, expressed
LOC_Os01g67840NANA1+39750176..39753880hypothetical protein
LOC_Os01g67850Os.13901.1.S1_at11/111+39755916..39759273Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g67860Os.8999.3.S1_x_at10/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67860Os.8999.1.S1_at8/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67870Os.50939.1.S1_at9/111+39764817..39769722expressed protein
LOC_Os01g67870OsAffx.17910.1.S1_at1/111+39764817..39769722expressed protein
LOC_Os01g67880OsAffx.23963.1.S1_x_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67880Os.54646.1.S1_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67890OsAffx.2430.1.S1_at11/111+39786448..39787899SRF-type transcription factor family protein, expressed
LOC_Os01g67900NANA1+39790665..39791009hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_x_at8/111+39792113..39793197hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_at5/111+39792113..39793197hypothetical protein
LOC_Os01g67920Os.21106.1.S1_at11/111+39794462..39800667TPR Domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008120molecular_functionceramide glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50939.1.S1_at--162--7351Chr01:39765612..39765636 (25 bp)
GTGCAACATGTTGTCTCCCGAAGGG
LOC_Os01g67870
Os.50939.1.S1_at--189--7551Chr01:39765590..39765614 (25 bp)
GGGCCAAAAGTCTCTCTTGGTTCTT
LOC_Os01g67870
Os.50939.1.S1_at--448--7891NONE
GGTTCTTATAACTGTGGACTCGTCT
NONE
Os.50939.1.S1_at--98--2011Chr01:39765452..39765472 (21 bp)
ACTCGTCTTCATAGCTGTGTTGGTA
LOC_Os01g67870
Os.50939.1.S1_at--182--2051Chr01:39765423..39765447 (25 bp)
ACTTTCTCTACCCTATATCTGCATT
LOC_Os01g67870
Os.50939.1.S1_at--892--10531Chr01:39765400..39765424 (25 bp)
TTCAGGTCTCATTTTTCCCAATCAA
LOC_Os01g67870
Os.50939.1.S1_at--490--431Chr01:39765112..39765136 (25 bp)
ATCATTGCTTGGTTACTTGTCTAGA
LOC_Os01g67870
Os.50939.1.S1_at--619--6591Chr01:39764950..39764974 (25 bp)
GATTGCTAGGCTCTCATTCATATTG
LOC_Os01g67870
Os.50939.1.S1_at--661--2891Chr01:39764897..39764921 (25 bp)
AAGGTTTGCACCTCATAGTTCTTGT
LOC_Os01g67870
Os.50939.1.S1_at--989--3011Chr01:39764835..39764859 (25 bp)
AATGCTTCATACTTGTTCCGTTCTC
LOC_Os01g67870
Os.50939.1.S1_at--108--4031Chr01:39764817..39764841 (25 bp)
CGTTCTCGGTTCTGCTTTTATGATC
NONE
Target Sequence 
GTGCAACATGTTGTCTCCCGAAGGGCCAAAAGTCTCTCTTGGTTCTTATAACTGTGGACTCGTCTTCATAGCTGTGTTGG
TAGACAACTTTCTCTACCCTATATCTGCATTCAGGTCTCATTTTTCCCAATCAATCAATTGGTCTGGTATCAGGTACCAC
CTGAAAGATGGGAAAATAAGCAAGATCGAGAGAGAGAACAAATTGAAGTATACTGATCTTGGTGGGAAGCATCTGTATGG
CAAGAGGACATACCCTTCCAAAACATCATTGCTTGGTTACTTGTCTAGAACTGTAGCGCAATGGCACCAGNCCAAGAAGT
ATGATGTCTAGGAANGCAAANCAGAAATTTANGCCTCAATTTAGGCCTTGTNGTACACTCCTTTTTGGTCTCCATCTTCT
TTTTTCTTTTCTTCTGATTGTCTATTGATTGCTAGGCTCTCATTCATATTGAATTTGGTGTTCAAGCAGTGTCATATCAA
AGGTTTGCACCTCATAGTTCTTGTAACAGTATAGATATGTAACATCTGATCGAAGAAGTGAAATGCTTCATACTTGTTCC
GTTCTCGGTTCTGCTTTTATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis