Browse Element(s) Details


OsAffx.2432.1.S1_at

Description tigr:9629.m06761
TID=OsAffx.2432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=histone deacetylase 2 isoform b
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6810411/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed
LOC_Os01g68070Os.52250.1.A1_at11/111+39903897..39907035salt-inducible protein, putative, expressed
LOC_Os01g68080OsAffx.23965.1.S1_at11/111+39907344..39908254Harpin-induced protein 1 containing protein
LOC_Os01g68090OsAffx.11785.1.S1_at11/111+39909204..39910571Harpin-induced protein 1 containing protein
LOC_Os01g68104OsAffx.2432.1.S1_at11/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104Os.19434.1.S1_at9/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.3.S1_at7/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.2.S1_x_at2/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.1.S1_at1/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68120Os.49417.1.S1_at11/111+39919469..39932566RNase3 domain containing protein, expressed
LOC_Os01g68130OsAffx.2433.1.S1_at9/111+39935234..39938852hypothetical protein
LOC_Os01g68140Os.10675.1.A1_at11/111+39939872..39941187expressed protein
LOC_Os01g68160Os.9025.2.S1_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160Os.9025.1.A1_s_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160OsAffx.21304.1.S1_at2/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2432.1.S1_at--859--10371Chr01:39916630..39916654 (25 bp)
TTTTCCTTAACCTTTTGCCTGGCTG
LOC_Os01g68104
OsAffx.2432.1.S1_at--1144--10271Chr01:39916643..39916667 (25 bp)
TTTGCCTGGCTGTATGCACATCTGA
LOC_Os01g68104
OsAffx.2432.1.S1_at--206--9031Chr01:39916657..39916681 (25 bp)
TGCACATCTGACTCTCCTACTGAAG
LOC_Os01g68104
OsAffx.2432.1.S1_at--1020--691Chr01:39916788..39916812 (25 bp)
ATGAGGAGGTTCCACTGGCTATTCC
LOC_Os01g68104
OsAffx.2432.1.S1_at--277--1011Chr01:39916794..39916818 (25 bp)
AGGTTCCACTGGCTATTCCACTATT
LOC_Os01g68104
OsAffx.2432.1.S1_at--143--10232Chr11:10390670..10391104 (25 bp)
TATTCCACTATTCCCCAATTCAGAT
NONE
OsAffx.2432.1.S1_at--890--2031Chr01:39916813..39916975 (25 bp)
ACTATTCCCCAATTCAGATGATGAT
LOC_Os01g68104
OsAffx.2432.1.S1_at--567--2491Chr01:39917026..39917050 (25 bp)
AACAGTCCAAGTAAGTTTGCCACAC
LOC_Os01g68104
OsAffx.2432.1.S1_at--453--10291Chr01:39917041..39917065 (25 bp)
TTTGCCACACTTAAGTCTGCTGCTG
LOC_Os01g68104
OsAffx.2432.1.S1_at--751--1391Chr01:39917395..39917553 (25 bp)
AGACTCCTTCAAAGATCTTGTGTGC
LOC_Os01g68104
OsAffx.2432.1.S1_at--1038--1271Chr01:39917541..39917565 (25 bp)
AGATCTTGTGTGCAGGAACTGGCAA
LOC_Os01g68104
Target Sequence 
TTTTCCTTAACCTTTTGCCTGGCTGTATGCACATCTGACTCTCCTACTGAAGAAGGTGATGAATCTGATGAGGAGGTTCC
ACTGGCTATTCCACTATTCCCCAATTCAGATGATGATAAGATCAAAGAAGTTCAAAACAGTCCAAGTAAGTTTGCCACAC
TTAAGTCTGCTGCTGCTGCATCCCCTACACCAGAGGCTATTGTAGAGGAAAGAAAGAATTATGGGAAATCAGAAGCTGAT
GATGATGACAGCGATGAAGAAAGTGATGCTTCAGGCGAGGATGAATATGATGATGATGAGGATATGATTGATAAACAGGA
TTCTAGTGATGATGATGGTGATAGTTCGGATGAAGAAGAGACTCCTTCAAAGATCTTGTGTGCAGGAACTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis