Browse Element(s) Details


Os.19434.1.S1_at

Description gb:CA764965
DB_XREF= gi:27546880
DB_XREF=AF53-Rpf_05_J24_T7_086.ab1
CLONE=C0001776
TID=Os.19434.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19434 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48401 (A.thaliana) T48401 histone deacetylase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g681049/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed
LOC_Os01g68070Os.52250.1.A1_at11/111+39903897..39907035salt-inducible protein, putative, expressed
LOC_Os01g68080OsAffx.23965.1.S1_at11/111+39907344..39908254Harpin-induced protein 1 containing protein
LOC_Os01g68090OsAffx.11785.1.S1_at11/111+39909204..39910571Harpin-induced protein 1 containing protein
LOC_Os01g68104OsAffx.2432.1.S1_at11/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104Os.19434.1.S1_at9/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.3.S1_at7/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.2.S1_x_at2/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.1.S1_at1/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68120Os.49417.1.S1_at11/111+39919469..39932566RNase3 domain containing protein, expressed
LOC_Os01g68130OsAffx.2433.1.S1_at9/111+39935234..39938852hypothetical protein
LOC_Os01g68140Os.10675.1.A1_at11/111+39939872..39941187expressed protein
LOC_Os01g68160Os.9025.2.S1_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160Os.9025.1.A1_s_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160OsAffx.21304.1.S1_at2/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19434.1.S1_at--1001--911NONE
AGGCATGTTGAAACACCCTTGAACA
NONE
Os.19434.1.S1_at--718--10751NONE
TTGAACACTCCTCCACAGAAAAGGG
NONE
Os.19434.1.S1_at--266--8311Chr01:39917425..39917449 (25 bp)
GGCTAGCAACCCCAATTATGGACAG
LOC_Os01g68104
Os.19434.1.S1_at--467--5651Chr01:39917445..39917567 (25 bp)
GACAGCAAAGCTGGAACTGGCAAGA
LOC_Os01g68104
Os.19434.1.S1_at--1055--5691Chr01:39917850..39917874 (25 bp)
GACTTTCAACACCTCTATGGGTCTG
LOC_Os01g68104
Os.19434.1.S1_at--936--4291Chr01:39917861..39917885 (25 bp)
CCTCTATGGGTCTGGAAGCTCATTC
LOC_Os01g68104
Os.19434.1.S1_at--119--8391Chr01:39917889..39917913 (25 bp)
GGCGAAACACACTGCAACTAAGTGA
LOC_Os01g68104
Os.19434.1.S1_at--255--1111Chr01:39917909..39917933 (25 bp)
AGTGATCTGAAATACCTTCTGGGCA
LOC_Os01g68104
Os.19434.1.S1_at--818--9271Chr01:39917935..39917959 (25 bp)
TCCTGTGTAGGTGTGTTAGTGATAG
LOC_Os01g68104
Os.19434.1.S1_at--259--8871Chr01:39917995..39918019 (25 bp)
TGATGAAGCACAATTTTGGAGCACT
LOC_Os01g68104
Os.19434.1.S1_at--199--1271Chr01:39918041..39918065 (25 bp)
AGATATATGGCGCTTTTTTAATGAA
LOC_Os01g68104
Target Sequence 
AGGCATGTTGAAACACCCTTGAACACTCCTCCACAGAAAAGGGCAAGGCTAGCAACCCCAATTATGGACAGCAAAGCTGG
AACTGGCAAGAGAAGTGGCTATGTCCATGTCGCGACTCCTTATCCAGCAAAACAGGCAAAGAAGACACCTGTAAACAATG
ACATGGCTAAGCAATCCTCTGGCTATGTCCACGTTGNCGACCCCTTATCCAGCAAAACAGGCAAAGAAGAGGACTGCCAA
TAATGACATGTCTGAGCATTCTGCTGGTTATGCCTGCAAGNCATGCANCANGACTTTCAACACCTCTATGGGTCTGGAAG
CTCATTCCANGGCGAAACACACTGCAACTAAGTGATCTGAAATACCTTCTGGGCANTCCTGTGTAGGTGTGTTAGTGATA
GGTAACTGAATTCTGAAGCTGGAGATCCAGATATTTTGATGAAGCACAATTTTGGAGCACTTGCCNAGTTTCTGAAACAT
GTAGATATATGGCGCTTTTTTAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis