Browse Element(s) Details


Os.47795.1.S1_at

Description gb:AK070012.1
DB_XREF= gi:32980036
TID=Os.47795.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037B16, full insert sequence.
FL= gb:AK070012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6823011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68160Os.9025.2.S1_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160Os.9025.1.A1_s_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160OsAffx.21304.1.S1_at2/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68179NANA1+39961528..39962031hypothetical protein
LOC_Os01g68200OsAffx.23969.1.S1_at11/111+39965630..39968123expressed protein
LOC_Os01g68210OsAffx.11786.1.S1_at11/111+39970541..39971692hypothetical protein
LOC_Os01g68220Os.35344.18.S1_x_at10/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220Os.35344.3.S1_x_at9/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220OsAffx.22940.5.S1_x_at3/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68230Os.47795.1.S1_at11/111+39981483..39984634expressed protein
LOC_Os01g68240OsAffx.2435.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68240Os.52822.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein
LOC_Os01g68260Os.42786.1.A1_at9/111+39993504..39997516expressed protein
LOC_Os01g68270Os.33773.1.S1_at11/111+39997588..39999102expressed protein
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47795.1.S1_at--783--6491Chr01:39982041..39982065 (25 bp)
GATAGCAGACCACATATTCGGAAAT
LOC_Os01g68230
Os.47795.1.S1_at--93--791Chr01:39981986..39982010 (25 bp)
ATGTGCATCTTTCGTTTTGCCATTC
LOC_Os01g68230
Os.47795.1.S1_at--363--3591Chr01:39981966..39981990 (25 bp)
CATTCCGCACCTTTTAACACTATAA
LOC_Os01g68230
Os.47795.1.S1_at--253--3331Chr01:39981949..39981973 (25 bp)
CACTATAATCCTTTGTTGTCGCTAT
LOC_Os01g68230
Os.47795.1.S1_at--397--831Chr01:39981916..39981940 (25 bp)
ATGGAACTTTACCAGTGGCCTGCAA
LOC_Os01g68230
Os.47795.1.S1_at--1020--7031Chr01:39981685..39981709 (25 bp)
GTAACAAGCCTTTTAACTTCTTCAG
LOC_Os01g68230
Os.47795.1.S1_at--259--3211Chr01:39981649..39981673 (25 bp)
CAAGTGCAGCTTTGGTAGTTTCTTT
LOC_Os01g68230
Os.47795.1.S1_at--127--6951Chr01:39981635..39981659 (25 bp)
GTAGTTTCTTTGGATTGGCCATCAA
LOC_Os01g68230
Os.47795.1.S1_at--220--5251Chr01:39981610..39981634 (25 bp)
GAATCACATGCACATTCGCGTATGC
LOC_Os01g68230
Os.47795.1.S1_at--741--4991Chr01:39981561..39981585 (25 bp)
GCATGATTACGTACCGATCTCTGTA
LOC_Os01g68230
Os.47795.1.S1_at--699--6891Chr01:39981502..39981526 (25 bp)
GTATACATTGTCGTGCATGATCGTA
LOC_Os01g68230
Target Sequence 
GATAGCAGACCACATATTCGGAAATATAGCTGGCTACTCTCAAAAGTAAAACTCAATGTGCATCTTTCGTTTTGCCATTC
CGCACCTTTTAACACTATAATCCTTTGTTGTCGCTATAATATCAAATGGAACTTTACCAGTGGCCTGCAAATGAGATTAT
TATAAGATACTCCCTCCGTTTCGCAATGTAAGTCATTCTAGTATTTCTCACATTTATATTGATGTTAATGAATCTAGACA
TATATATTCATTAACATCAATATAAATGTGGAAAATGCTAGAATGACTTAACATTGCGAAACGGAGGAAGTATATATTTA
TTATTTATCGTTTTATTATTCTTTTATTTTTGACAGGTAACAAGCCTTTTAACTTCTTCAGTTAATCAGGACCAAGTGCA
GCTTTGGTAGTTTCTTTGGATTGGCCATCAAGAATCACATGCACATTCGCGTATGCATGTGGAGTTCCAAAACCAATGTT
GCATGATTACGTACCGATCTCTGTAAATCAAAATGATGGCATACCGAGTTTGGTGTTATGTATACATTGTCGTGCATGAT
CGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis