Browse Element(s) Details


Os.42784.1.S1_at

Description gb:NM_189885.1
DB_XREF= gi:34906853
GEN=P0470A12.4
TID=Os.42784.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.4 (P0470A12.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0470A12.4 (P0470A12.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g682908/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68230Os.47795.1.S1_at11/111+39981483..39984634expressed protein
LOC_Os01g68240OsAffx.2435.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68240Os.52822.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein
LOC_Os01g68260Os.42786.1.A1_at9/111+39993504..39997516expressed protein
LOC_Os01g68270Os.33773.1.S1_at11/111+39997588..39999102expressed protein
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein
LOC_Os01g68320Os.12967.1.A1_a_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68320Os.12967.4.S1_x_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68324Os.9998.2.S1_x_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324Os.9998.1.S1_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.1.S1_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.2.S1_s_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68330Os.27858.1.S1_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68330Os.27858.2.S1_x_at11/111+40030156..40034899ABC transporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42784.1.S1_at--468--7011Chr01:40006896..40006920 (25 bp)
GTACTACTCGGAGGTGGACCACTGC
LOC_Os01g68290
Os.42784.1.S1_at--796--5851Chr01:40006880..40006904 (25 bp)
GACCACTGCGCGGAGGAGATGAACA
LOC_Os01g68290
Os.42784.1.S1_at--329--8371Chr01:40006640..40006664 (25 bp)
GGCGGGCGCCAGTACGACTCCTGCA
LOC_Os01g68290
Os.42784.1.S1_at--600--9031Chr01:40006619..40006643 (25 bp)
TGCACCGGCCAGTACTACGGCTGAG
LOC_Os01g68290
Os.42784.1.S1_at--113--9931Chr01:40006604..40006628 (25 bp)
TACGGCTGAGCACGTTCGGTCGCAC
LOC_Os01g68290
Os.42784.1.S1_at--951--5771Chr01:40006577..40006601 (25 bp)
GACGACGTACGCGAGGCTGCAGTTT
LOC_Os01g68290
Os.42784.1.S1_at--278--8331Chr01:40006563..40006587 (25 bp)
GGCTGCAGTTTCTGTATGACTATGT
LOC_Os01g68290
Os.42784.1.S1_at--1013--3771Chr01:40006484..40006508 (25 bp)
CTCTGACGCACGTACGAGCGTGTGT
LOC_Os01g68290
Os.42784.1.S1_at--384--5891NONE
GAGCGTGTGTCTACGCGCACTTGCA
NONE
Os.42784.1.S1_at--1010--5091NONE
GCACTTGCAGCATCTTATCTGTGGG
NONE
Os.42784.1.S1_at--817--10391NONE
TTATCTGTGGGCTGTACGTACGAAA
NONE
Target Sequence 
GTACTACTCGGAGGTGGACCACTGCGCGGAGGAGATGAACAGGCCGCCGCACGCCGGCGGCGAGCACTACGCCGTCAGGA
GGGAGTCGTACGAGGAGGTGGACGAGATGGCGCGCGCCGGCNGGGGGCACCACCACGGCNACGGCGGCGGCGGCGGCCAC
CTGGGCTACAGCGGCAGCCGCCACGGTGATGCCCATCTGGGCGGCCACCGGGAGGAGCACCTCGTCCACGGTGACGAGCA
CCGCCACGGCCACGGCGGCGGGCGCCAGTACGACTCCTGCACCGGCCAGTACTACGGCTGAGCACGTTCGGTCGCACCGG
ACGACGTACGCGAGGCTGCAGTTTCTGTATGACTATGTGTGAGTGTGTGTGTGTGTGTGTGCACGGTCGTGTACATGGTG
TGGGTGTGCCGCGCTCTGACGCACGTACGAGCGTGTGTCTACGCGCACTTGCAGCATCTTATCTGTGGGCTGTACGTACG
AAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis