Browse Element(s) Details


Os.12967.4.S1_x_at

Description gb:CB650564
DB_XREF= gi:29645557
DB_XREF=OSJNEb15B07.r
CLONE=OSJNEb15B07
TID=Os.12967.4
CNT=63
FEA=FLmRNA
TIER=Stack
STK=11
UG=Os.12967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA helicase (P0470A12.6), mRNA
FL= gb:AK064782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6832011/11ATP-dependent RNA helicase DBP2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein
LOC_Os01g68260Os.42786.1.A1_at9/111+39993504..39997516expressed protein
LOC_Os01g68270Os.33773.1.S1_at11/111+39997588..39999102expressed protein
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein
LOC_Os01g68320Os.12967.1.A1_a_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68320Os.12967.4.S1_x_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68324Os.9998.2.S1_x_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324Os.9998.1.S1_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.1.S1_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.2.S1_s_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68330Os.27858.1.S1_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68330Os.27858.2.S1_x_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68340NANA1+40037705..40039761retrotransposon protein, putative, unclassified
LOC_Os01g68350OsAffx.20387.1.S1_x_at1/111+40040578..40044471retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12967.4.S1_x_at--1117--6351Chr01:40017785..40017809 (25 bp)
GATCCGGCCAGACAGGCAAACCTTG
LOC_Os01g68320
Os.12967.4.S1_x_at--1128--5131Chr01:40017770..40017794 (25 bp)
GCAAACCTTGTATTGGAGTGCCACT
LOC_Os01g68320
Os.12967.4.S1_x_at--774--5251Chr01:40017730..40017754 (25 bp)
GAATCCTTGGCTAGACAATTTCTGC
LOC_Os01g68320
Os.12967.4.S1_x_at--541--5611Chr01:40017328..40017352 (25 bp)
GACAAGGTCACTCGTCAACTTAGAA
LOC_Os01g68320
Os.12967.4.S1_x_at--1041--7991Chr01:40017298..40017322 (25 bp)
GGATGGCCAGCATTATCTATTCATG
LOC_Os01g68320
Os.12967.4.S1_x_at--897--2871Chr01:40017254..40017278 (25 bp)
AAGGGACTATGTTCTGGCAGAGTTC
LOC_Os01g68320
Os.12967.4.S1_x_at--864--2431Chr01:40017220..40017244 (25 bp)
AAAAGTCCTATAATGGCTGCCACAG
LOC_Os01g68320
Os.12967.4.S1_x_at--1115--5091Chr01:40017187..40017211 (25 bp)
GCACGTGGTCTTGGTATGGTGACTT
LOC_Os01g68320
Os.12967.4.S1_x_at--259--10091Chr01:40017146..40017170 (25 bp)
TAGGTTGTAGTTCCAAGTGCTCAAG
LOC_Os01g68320
Os.12967.4.S1_x_at--864--8331Chr01:40017106..40017130 (25 bp)
GGCTGTCAGCTGTTTTTGGTTGAGT
LOC_Os01g68320
Os.12967.4.S1_x_at--88--5191Chr01:40017053..40017077 (25 bp)
GCAAGGTGCCATCATGTCAGAGGTA
LOC_Os01g68320
Target Sequence 
GATCCGGCCAGACAGGCAAACCTTGTATTGGAGTGCCACTTGGCCAAGAGAAGTAGAATCCTTGGCTAGACAATTTCTGC
AGAACCCATACAAGGTAATCATAGGATCACCTGATCTGAAAGCTAATCATTCCATACAGCAAATTATTGAGGTCATATCT
GAACACGAAAAGTATCCCAGACTCAGTAAACTTTTATCTGATCTAATGGATGGAAGCAGAATCTTGATATTTTTCCAAAC
TAAAAAGGACTGTGACAAGGTCACTCGTCAACTTAGAATGGATGGATGGCCAGCATTATCTATTCATGGTGACAAAGCTC
AAGCAGAAAGGGACTATGTTCTGGCAGAGTTCAAGAGTGGGAAAAGTCCTATAATGGCTGCCACAGATGTAGCGGCACGT
GGTCTTGGTATGGTGACTTGTTTGAAAATTAGAATTAGGTTGTAGTTCCAAGTGCTCAAGGATGATAAGTCGGAGGGCTG
TCAGCTGTTTTTGGTTGAGTGAACTGAACTTGTGGATTGATGGTGTATGCAAGGTGCCATCATGTCAGAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12967.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis