Browse Element(s) Details


Os.9998.1.S1_at

Description gb:AK101333.1
DB_XREF= gi:32986542
TID=Os.9998.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.7 (P0470A12.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034I01, full insert sequence.
FL= gb:AK101333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6832411/11Ribophorin II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68270Os.33773.1.S1_at11/111+39997588..39999102expressed protein
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein
LOC_Os01g68320Os.12967.1.A1_a_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68320Os.12967.4.S1_x_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68324Os.9998.2.S1_x_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324Os.9998.1.S1_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.1.S1_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.2.S1_s_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68330Os.27858.1.S1_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68330Os.27858.2.S1_x_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68340NANA1+40037705..40039761retrotransposon protein, putative, unclassified
LOC_Os01g68350OsAffx.20387.1.S1_x_at1/111+40040578..40044471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g68359NANA1+40050018..40050158NA
LOC_Os01g68370Os.7360.1.S1_a_at11/111+40050020..40053833Viviparous protein homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006496biological_processprotein amino acid terminal N-glycosylation
GO:0005789cellular_componentendoplasmic reticulum membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9998.1.S1_at--295--5371Chr01:40029715..40029739 (25 bp)
GAAGACTGCTTGAGAGGACGATCCA
LOC_Os01g68324
Os.9998.1.S1_at--206--5771Chr01:40029731..40029755 (25 bp)
GACGATCCAAAGAGGAGTATTCCGA
LOC_Os01g68324
Os.9998.1.S1_at--616--9691Chr01:40029757..40029781 (25 bp)
TCACAAAATTTTCAAGCGTCACAAG
LOC_Os01g68324
Os.9998.1.S1_at--942--9711Chr01:40029768..40029792 (25 bp)
TCAAGCGTCACAAGTTGCTTAGGTT
LOC_Os01g68324
Os.9998.1.S1_at--182--7911Chr01:40029789..40029813 (25 bp)
GGTTCCTTATTTTAGCACCTTCGCT
LOC_Os01g68324
Os.9998.1.S1_at--195--1511Chr01:40029802..40029826 (25 bp)
AGCACCTTCGCTTTGATATTCTGAC
LOC_Os01g68324
Os.9998.1.S1_at--1121--6511Chr01:40029816..40029840 (25 bp)
GATATTCTGACCATTTTTCTTGAGC
LOC_Os01g68324
Os.9998.1.S1_at--966--10531Chr01:40029832..40029856 (25 bp)
TTCTTGAGCAACTTCGAGTTACGAG
LOC_Os01g68324
Os.9998.1.S1_at--190--951Chr01:40029855..40029879 (25 bp)
AGGGACGAGTCGATTTCAGTTTTGT
LOC_Os01g68324
Os.9998.1.S1_at--889--6291Chr01:40029929..40029953 (25 bp)
GATGATGCCCTGATGTGTTCTCAAT
LOC_Os01g68324
Os.9998.1.S1_at--35--6271Chr01:40029940..40029964 (25 bp)
GATGTGTTCTCAATAGACGTATGTT
LOC_Os01g68324
Target Sequence 
GAAGACTGCTTGAGAGGACGATCCAAAGAGGAGTATTCCGAATCACAAAATTTTCAAGCGTCACAAGTTGCTTAGGTTCC
TTATTTTAGCACCTTCGCTTTGATATTCTGACCATTTTTCTTGAGCAACTTCGAGTTACGAGGGACGAGTCGATTTCAGT
TTTGTGGGGGTTAAGAATACTGGAGCTAGAATGTAGGNCCTCACCTTCTTGTATGATGATGCCCTGATGTGTTCTCAATA
GACGTATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis