Browse Element(s) Details


Os.33773.1.S1_at

Description gb:AK099048.1
DB_XREF= gi:32984257
TID=Os.33773.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.2 (P0470A12.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149K21, full insert sequence.
FL= gb:AK099048.1 gb:AK072044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6827011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68220Os.35344.18.S1_x_at10/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220Os.35344.3.S1_x_at9/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220OsAffx.22940.5.S1_x_at3/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68230Os.47795.1.S1_at11/111+39981483..39984634expressed protein
LOC_Os01g68240OsAffx.2435.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68240Os.52822.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein
LOC_Os01g68260Os.42786.1.A1_at9/111+39993504..39997516expressed protein
LOC_Os01g68270Os.33773.1.S1_at11/111+39997588..39999102expressed protein
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein
LOC_Os01g68320Os.12967.1.A1_a_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68320Os.12967.4.S1_x_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68324Os.9998.2.S1_x_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324Os.9998.1.S1_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.1.S1_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.2.S1_s_at1/111+40022895..40030022Ribophorin II family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33773.1.S1_at--791--1511Chr01:39998153..39998177 (25 bp)
AGCAGCGGCGGCCATACCCAATACC
LOC_Os01g68270
Os.33773.1.S1_at--454--3091Chr01:39998134..39998158 (25 bp)
AATACCACCACCAATCCTACGAATG
LOC_Os01g68270
Os.33773.1.S1_at--348--3371Chr01:39998129..39998153 (25 bp)
CACCACCAATCCTACGAATGCGAGG
LOC_Os01g68270
Os.33773.1.S1_at--733--4371Chr01:39998124..39998148 (25 bp)
CCAATCCTACGAATGCGAGGAGGAA
LOC_Os01g68270
Os.33773.1.S1_at--825--9031Chr01:39997787..39997811 (25 bp)
TAATCCCAAACTAATTAACCGCGCG
LOC_Os01g68270
Os.33773.1.S1_at--662--9731Chr01:39997745..39997769 (25 bp)
TCAATTGCGTTGCTGATGCGCTTAA
LOC_Os01g68270
Os.33773.1.S1_at--166--3171Chr01:39997743..39997767 (25 bp)
AATTGCGTTGCTGATGCGCTTAAAA
LOC_Os01g68270
Os.33773.1.S1_at--1152--9131Chr01:39997740..39997764 (25 bp)
TGCGTTGCTGATGCGCTTAAAATAA
LOC_Os01g68270
Os.33773.1.S1_at--369--1831Chr01:39997707..39997731 (25 bp)
ACGCTTGGCTTAAGAAGTTACTATT
LOC_Os01g68270
Os.33773.1.S1_at--588--6771Chr01:39997691..39997715 (25 bp)
GTTACTATTACTACTAAGATCTCTA
LOC_Os01g68270
Os.33773.1.S1_at--524--4811Chr01:39997629..39997653 (25 bp)
GCTCTGCATCCACTATGTGGTAAAT
LOC_Os01g68270
Target Sequence 
AGCAGCGGCGGCCATACCCAATACCACCACCAATCCTACGAATGCGAGGAGGAAGATTCCGACGAGGACGACTGCGAGGA
CGACGACGACGACGAGAGCGACGACGACGACGACGACGGCCACTGCCCACCTAGCCGCCAAGGCAGCGTCCACAGCTACC
ACCAGGCGGCGTACCAGCACGAGGAGAAGCAGCACGCCGGCGGCCGCAACCACTACCATGCATACGAGCGCCACGAGGAG
CACGGCGGCGGCGCGCAACGCTACCAGAAGTACGAGAGCTCCACCCAGGTGGGCTACGCCGGCGGCGGCGGCGGCAACGG
CGGATGCGTGCGTGGCAATGCCAAGCCATGTTTCCGAATCATGGCCTAATCCCAAACTAATTAACCGCGCGTAAGTAAAA
AAAAAATATCAATTGCGTTGCTGATGCGCTTAAAATAAACTGTTCGACGCTTGGCTTAAGAAGTTACTATTACTACTAAG
ATCTCTAATGTATCAGAAAATAAATTGTATGTCTTATTATAGATGCTCTGCATCCACTATGTGGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis