Browse Element(s) Details


Os.11975.1.S1_at

Description gb:AK064047.1
DB_XREF= gi:32974065
TID=Os.11975.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.5 (P0470A12.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-D10, full insert sequence.
FL= gb:AK103283.1 gb:AK064047.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6831011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68240OsAffx.2435.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68240Os.52822.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein
LOC_Os01g68260Os.42786.1.A1_at9/111+39993504..39997516expressed protein
LOC_Os01g68270Os.33773.1.S1_at11/111+39997588..39999102expressed protein
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein
LOC_Os01g68320Os.12967.1.A1_a_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68320Os.12967.4.S1_x_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68324Os.9998.2.S1_x_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324Os.9998.1.S1_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.1.S1_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.2.S1_s_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68330Os.27858.1.S1_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68330Os.27858.2.S1_x_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68340NANA1+40037705..40039761retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11975.1.S1_at--961--9371Chr01:40012100..40012124 (25 bp)
TCGAGCTCCGCTGACAAAACGTGAT
LOC_Os01g68310
Os.11975.1.S1_at--360--5971Chr01:40011909..40012079 (25 bp)
GAGAAAAGAGCTTCACGGGCTACGG
LOC_Os01g68310
Os.11975.1.S1_at--703--4171Chr01:40011806..40011830 (25 bp)
CCCCATTTCAAGAGCGGAGGTCGGA
LOC_Os01g68310
Os.11975.1.S1_at--399--4371Chr01:40011741..40011765 (25 bp)
CCACAGATGGCGTTTCACACAGCAA
LOC_Os01g68310
Os.11975.1.S1_at--749--1111Chr01:40011664..40011688 (25 bp)
AGTGATTTTCTTCGGCATGAGAGCC
LOC_Os01g68310
Os.11975.1.S1_at--151--5871Chr01:40011644..40011668 (25 bp)
GAGCCATGTTGGTTAGAATCAGCAG
LOC_Os01g68310
Os.11975.1.S1_at--391--3411Chr01:40011625..40011649 (25 bp)
CAGCAGGTTTTGTGCATCTATCTGT
LOC_Os01g68310
Os.11975.1.S1_at--300--8731Chr01:40011603..40011627 (25 bp)
TGTCAACTTGTTCTTCAGTACGCGG
LOC_Os01g68310
Os.11975.1.S1_at--669--2011Chr01:40011506..40011530 (25 bp)
ACTCATGATCATGCCAATTGCCAGA
LOC_Os01g68310
Os.11975.1.S1_at--927--151Chr01:40011482..40011506 (25 bp)
ATAGTGTTTCCGGAATCCTCCTGTA
LOC_Os01g68310
Os.11975.1.S1_at--375--3291Chr01:40011456..40011480 (25 bp)
CACATTCTTGAATAACCGCTTGGTT
LOC_Os01g68310
Target Sequence 
TCGAGCTCCGCTGACAAAACGTGATAAGCAGACGGAGAAGNGGATGAGAAAAGAGCTTCACGGGCTACGGGGCCTAACAG
ATGGATTCGATCTTGGAATTAACATGTTCGTCGATGGAGACAAGGATAATGATGTCGGTTCAACCGAACCCCATTTCAAG
AGCGGAGGTCGGAGAAAACACCATAAAGGCAAGAGGAAGAGGCATTAGTGAACCCACAGATGGCGTTTCACACAGCAATG
TCACATTCAAAACCAAAATTTTGATCTGTGCGAATTGAGTAGTATAAATGAGTGATTTTCTTCGGCATGAGAGCCATGTT
GGTTAGAATCAGCAGGTTTTGTGCATCTATCTGTCAACTTGTTCTTCAGTACGCGGTTAAAAGATATTGATCGTCGATAC
TTAAGTCAATTGGTAATCTGTCGTTATGATTTTGTTTGTAATCCTGTGACTCATGATCATGCCAATTGCCAGATAGTGTT
TCCGGAATCCTCCTGTACCACATTCTTGAATAACCGCTTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis