Browse Element(s) Details


Os.27858.2.S1_x_at

Description gb:NM_189889.1
DB_XREF= gi:34906861
GEN=P0470A12.8
TID=Os.27858.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27858 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ABC transporter (P0470A12.8), mRNA.
PROD=putative ABC transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6833011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein
LOC_Os01g68320Os.12967.1.A1_a_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68320Os.12967.4.S1_x_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68324Os.9998.2.S1_x_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324Os.9998.1.S1_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.1.S1_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.2.S1_s_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68330Os.27858.1.S1_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68330Os.27858.2.S1_x_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68340NANA1+40037705..40039761retrotransposon protein, putative, unclassified
LOC_Os01g68350OsAffx.20387.1.S1_x_at1/111+40040578..40044471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g68359NANA1+40050018..40050158NA
LOC_Os01g68370Os.7360.1.S1_a_at11/111+40050020..40053833Viviparous protein homolog, putative, expressed
LOC_Os01g68380Os.12849.2.S1_x_at11/111+40057147..40063666dentin sialophosphoprotein, putative, expressed
LOC_Os01g68380Os.12849.1.S1_at11/111+40057147..40063666dentin sialophosphoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27858.2.S1_x_at--121--10051Chr01:40031571..40031595 (25 bp)
TAGATGGTGTCCCACTCAGTGAGCT
LOC_Os01g68330
Os.27858.2.S1_x_at--814--5431Chr01:40031426..40031450 (25 bp)
GAACCTAGGCTATTCCGAATGGATA
LOC_Os01g68330
Os.27858.2.S1_x_at--547--5011Chr01:40031334..40031358 (25 bp)
GCAGGCATATGCTCACGATTTCATA
LOC_Os01g68330
Os.27858.2.S1_x_at--668--9771Chr01:40031311..40031335 (25 bp)
TAATGTCTCTCCCTGATGGTTATAA
LOC_Os01g68330
Os.27858.2.S1_x_at--946--31Chr01:40031282..40031306 (25 bp)
ATTGTCGATGATGCTCTTCTTAGTG
LOC_Os01g68330
Os.27858.2.S1_x_at--909--7511Chr01:40031260..40031284 (25 bp)
GTGGAGGCCAAAAGCAACGCGTTGC
LOC_Os01g68330
Os.27858.2.S1_x_at--730--2591Chr01:40031245..40031269 (25 bp)
AACGCGTTGCTATTGCGAGGGCCCT
LOC_Os01g68330
Os.27858.2.S1_x_at--777--7631Chr01:40031215..40031239 (25 bp)
GGGACCCATCCATCTTGGTATTAGA
LOC_Os01g68330
Os.27858.2.S1_x_at--809--2651Chr01:40031188..40031212 (25 bp)
AAGCCACTAGTGCACTTGATGCTGA
LOC_Os01g68330
Os.27858.2.S1_x_at--3--5711Chr01:40030907..40030931 (25 bp)
GACTATCTACAATTCAAGCGGCTGA
LOC_Os01g68330
Os.27858.2.S1_x_at--1084--7991Chr01:40030729..40030753 (25 bp)
GGATGGAAACCACAGCGAGCTTATT
LOC_Os01g68330
Target Sequence 
TAGATGGTGTCCCACTCAGTGAGCTTGACATCAGATGGTTCAGGGAAAGGATTGGTTTTGTTGGACAGGAACCTAGGCTA
TTCCGAATGGATATTAGTTCTAATATTAGGTATGGTTGTCCAAGAGAAGTTAGCAATGAAGAAGTGGAGTGGGCTGCAAA
GCAGGCATATGCTCACGATTTCATAATGTCTCTCCCTGATGGTTATAACACCATTGTCGATGATGCTCTTCTTAGTGGAG
GCCAAAAGCAACGCGTTGCTATTGCGAGGGCCCTTCTTAGGGACCCATCCATCTTGGTATTAGATGAAGCCACTAGTGCA
CTTGATGCTGAGAGTGAACATTATGTGAAGAATGTAATCACAAAGTTTAGTACTGATCCTAAGGCTAGAAGAACCGTGAT
CATCATAGCTCACAGACTATCTACAATTCAAGCGGCTGATAGAATTATCGTGATGGAAAATGGTAATATTGTGGAGGATG
GAAACCACAGCGAGCTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27858.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis