Browse Element(s) Details


Os.7360.1.S1_a_at

Description gb:AK073805.1
DB_XREF= gi:32983828
TID=Os.7360.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) transcription activator VP1 - rice (P0470A12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069I02, full insert sequence.
FL= gb:AK073805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6837011/11Viviparous protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68324Os.9998.2.S1_x_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324Os.9998.1.S1_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.1.S1_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.2.S1_s_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68330Os.27858.1.S1_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68330Os.27858.2.S1_x_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68340NANA1+40037705..40039761retrotransposon protein, putative, unclassified
LOC_Os01g68350OsAffx.20387.1.S1_x_at1/111+40040578..40044471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g68359NANA1+40050018..40050158NA
LOC_Os01g68370Os.7360.1.S1_a_at11/111+40050020..40053833Viviparous protein homolog, putative, expressed
LOC_Os01g68380Os.12849.2.S1_x_at11/111+40057147..40063666dentin sialophosphoprotein, putative, expressed
LOC_Os01g68380Os.12849.1.S1_at11/111+40057147..40063666dentin sialophosphoprotein, putative, expressed
LOC_Os01g68390Os.39982.1.S1_at11/111+40063962..40068555Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g68400NANA1+40069219..40069830hypothetical protein
LOC_Os01g68410OsAffx.22848.3.S1_x_at3/111+40077743..40083688retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009657biological_processplastid organization and biogenesis
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0009790biological_processembryonic development
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010116biological_processpositive regulation of abscisic acid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0017163molecular_functionnegative regulator of basal transcription activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7360.1.S1_a_at--775--9791Chr01:40050517..40050541 (25 bp)
TAAGCATAAGCATGGCTCGCCGGAG
LOC_Os01g68370
Os.7360.1.S1_a_at--56--7171Chr01:40050483..40050507 (25 bp)
GTCTCGTCCAATACAAAGGCCGCCG
LOC_Os01g68370
Os.7360.1.S1_a_at--267--3411Chr01:40050270..40050294 (25 bp)
CAGCAGCAAGCTTCAGTCCATTTGA
LOC_Os01g68370
Os.7360.1.S1_a_at--502--7331Chr01:40050174..40050198 (25 bp)
GTGCATGTGAATCGTAGCGCTAGCT
LOC_Os01g68370
Os.7360.1.S1_a_at--904--4571Chr01:40050158..40050182 (25 bp)
GCGCTAGCTAGGGATGATATTTGAT
LOC_Os01g68370
Os.7360.1.S1_a_at--646--10191Chr01:40050141..40050165 (25 bp)
TATTTGATCAGTAACCCGTAGTCCC
LOC_Os01g68370
Os.7360.1.S1_a_at--514--10071Chr01:40050123..40050147 (25 bp)
TAGTCCCCGTACCAGTGACGCTTAA
LOC_Os01g68370
Os.7360.1.S1_a_at--923--7371Chr01:40050109..40050133 (25 bp)
GTGACGCTTAAGTACGCATGGTTTG
LOC_Os01g68370
Os.7360.1.S1_a_at--192--10851Chr01:40050087..40050111 (25 bp)
TTGGTTGTTCATCGTTGAACCCCTG
LOC_Os01g68370
Os.7360.1.S1_a_at--140--8991Chr01:40050072..40050096 (25 bp)
TGAACCCCTGTAGTGTGTCGTCGTC
LOC_Os01g68370
Os.7360.1.S1_a_at--197--7211Chr01:40050056..40050080 (25 bp)
GTCGTCGTCCTGTACATGCATCGAA
LOC_Os01g68370
Target Sequence 
TAAGCATAAGCATGGCTCGCCGGAGAAACCCGGCGTCTCGTCCAATACAAAGGCCGCCGGCGCCGAGGACGGCACCGGCG
GCGATGACAGTGCCGAAGCCGCAGCGGCGGCGGCGGCAGGCAAGGCTGACGGCGGCGGCTGCAAGGGCAAGTCCCCGCAC
GGCGTGCGGCGTTCTCGCCAGGAGGCCGCCGCCGCCGCNTCCATGAGCCAGATGGCGGTTAGCATCTGAAGAAACAGATG
ACAGCAGCAGCAGCAAGCTTCAGTCCATTTGAAGGTTAATTATTAGCTAGCTAGCTCCGTATTATAACCGATGGTAAAAC
CTCCTAAAAAAATTAATTAAGTTGTGCATGTGAATCGTAGCGCTAGCTAGGGATGATATTTGATCAGTAACCCGTAGTCC
CCGTACCAGTGACGCTTAAGTACGCATGGTTTGGTTGTTCATCGTTGAACCCCTGTAGTGTGTCGTCGTCCTGTACATGC
ATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7360.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis