Browse Element(s) Details


OsAffx.24206.2.S1_s_at

Description tigr:9633.m03448
TID=OsAffx.24206.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3731011/11hypothetical protein
LOC_Os02g1217011/11hypothetical protein
LOC_Os01g683241/11Ribophorin II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37270NANA5+21722979..21729134retrotransposon protein, putative, unclassified
LOC_Os05g37280NANA5+21729781..21732971retrotransposon protein, putative, unclassified
LOC_Os05g37290NANA5+21738412..21740018retrotransposon protein, putative, unclassified
LOC_Os05g37300NANA5+21740665..21743972retrotransposon protein, putative, unclassified
LOC_Os05g37310OsAffx.24206.2.S1_s_at11/115+21746759..21747214hypothetical protein
LOC_Os05g37310OsAffx.24206.2.S1_at11/115+21746759..21747214hypothetical protein
LOC_Os05g37320OsAffx.20171.1.S1_at2/115+21748384..21751447transposon protein, putative, Mutator sub-class
LOC_Os05g37330Os.12360.1.S1_at11/115+21752238..2175449660s Acidic ribosomal protein, expressed
LOC_Os05g37340Os.15514.1.S1_at8/115+21756408..21759581expressed protein
LOC_Os05g37350OsAffx.14993.1.S1_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.53059.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350OsAffx.14993.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.26665.1.S1_x_at8/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein

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Gene Ontology Classification
GO idTypeName
GO:0006496biological_processprotein amino acid terminal N-glycosylation
GO:0005789cellular_componentendoplasmic reticulum membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24206.2.S1_s_at--418--4693Chr05:21746955..21746979 (25 bp)
GCGGCAGTGTTGAGGACGGCGACGA
LOC_Os05g37310
OsAffx.24206.2.S1_s_at--1147--5693Chr08:8059562..8059586 (25 bp)
GACGGCGGCCTAGTCGGCTTCGGTT
NONE
OsAffx.24206.2.S1_s_at--1106--4893Chr08:8059578..8059602 (25 bp)
GCTTCGGTTGGTGCGGCGATGGACA
NONE
OsAffx.24206.2.S1_s_at--1160--4613Chr08:8059593..8059617 (25 bp)
GCGATGGACAGCTCGGCGTCATCTT
NONE
OsAffx.24206.2.S1_s_at--912--9453Chr08:8059605..8059629 (25 bp)
TCGGCGTCATCTTCAGTGGTACGGC
NONE
OsAffx.24206.2.S1_s_at--401--7133Chr08:8059610..8059634 (25 bp)
GTCATCTTCAGTGGTACGGCGCCGT
NONE
OsAffx.24206.2.S1_s_at--1133--413Chr08:8059613..8059637 (25 bp)
ATCTTCAGTGGTACGGCGCCGTGGT
NONE
OsAffx.24206.2.S1_s_at--992--4573Chr08:8059642..8059666 (25 bp)
GCGAGTTGCCCTTGGGCAAATGTCC
NONE
OsAffx.24206.2.S1_s_at--193--1953Chr08:8059722..8059746 (25 bp)
GACGAATTTTAGTGTACCTTGGAGT
NONE
OsAffx.24206.2.S1_s_at--1109--6973Chr08:8059735..8059759 (25 bp)
GTACCTTGGAGTTGTGCAAGCTTTA
NONE
OsAffx.24206.2.S1_s_at--813--8033Chr08:8059742..8059766 (25 bp)
GGAGTTGTGCAAGCTTTATTATTAC
NONE
Target Sequence 
GCGGCAGTGTTGAGGACGGCGACGACGGCGGCCTAGTCGGCTTCGGTTGGTGCGGCGATGGACAGCTCGGCGTCATCTTC
AGTGGTACGGCGCCGTGGTGGTGGCGAGTTGCCCTTGGGCAAATGTCCATTGTGCCACTGATGGGGATTGTTGTCTCAGA
AATGAAGGGAGTTGAAGGAGTGGGACGAATTTTAGTGTACCTTGGAGTTGTGCAAGCTTTATTATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24206.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis