Browse Element(s) Details


Os.12360.1.S1_at

Description gb:AK121459.1
DB_XREF= gi:37991082
TID=Os.12360.1
CNT=77
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12360 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for ribosomal protein A2, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143J09, full insert sequence.
FL= gb:AK121459.1 gb:AK058730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3733011/1160s Acidic ribosomal protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37270NANA5+21722979..21729134retrotransposon protein, putative, unclassified
LOC_Os05g37280NANA5+21729781..21732971retrotransposon protein, putative, unclassified
LOC_Os05g37290NANA5+21738412..21740018retrotransposon protein, putative, unclassified
LOC_Os05g37300NANA5+21740665..21743972retrotransposon protein, putative, unclassified
LOC_Os05g37310OsAffx.24206.2.S1_s_at11/115+21746759..21747214hypothetical protein
LOC_Os05g37310OsAffx.24206.2.S1_at11/115+21746759..21747214hypothetical protein
LOC_Os05g37320OsAffx.20171.1.S1_at2/115+21748384..21751447transposon protein, putative, Mutator sub-class
LOC_Os05g37330Os.12360.1.S1_at11/115+21752238..2175449660s Acidic ribosomal protein, expressed
LOC_Os05g37340Os.15514.1.S1_at8/115+21756408..21759581expressed protein
LOC_Os05g37350OsAffx.14993.1.S1_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.53059.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350OsAffx.14993.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.26665.1.S1_x_at8/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37360OsAffx.27208.1.S1_at11/115+21774732..21775010hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12360.1.S1_at--484--3911Chr05:21753525..21753549 (25 bp)
CTGGAGTTCCTGCTCTCAGAACTGG
LOC_Os05g37330
Os.12360.1.S1_at--890--5331Chr05:21753590..21753614 (25 bp)
GAAGTTTGCTTCTGTGCCCTCAGGT
LOC_Os05g37330
Os.12360.1.S1_at--425--6831Chr05:21754112..21754136 (25 bp)
GTTTGACTAAGTACCTTCGGCTGCA
LOC_Os05g37330
Os.12360.1.S1_at--66--10531Chr05:21754149..21754173 (25 bp)
TTCACCCCAGTATCTTTCTGCATTG
LOC_Os05g37330
Os.12360.1.S1_at--193--4951Chr05:21754168..21754192 (25 bp)
GCATTGCTTGCTTTATCACTATGTG
LOC_Os05g37330
Os.12360.1.S1_at--857--7391Chr05:21754209..21754233 (25 bp)
GTGATGGCTCTATGTGTTTCTGCTA
LOC_Os05g37330
Os.12360.1.S1_at--1106--7411Chr05:21754222..21754246 (25 bp)
GTGTTTCTGCTATTTTTTGGTCGAG
LOC_Os05g37330
Os.12360.1.S1_at--513--5731Chr05:21754246..21754270 (25 bp)
GACTGTATATGTCTAGTATCCTAAG
LOC_Os05g37330
Os.12360.1.S1_at--606--2111Chr05:21754305..21754329 (25 bp)
ACATGTAATGTTTGCTATCGTGAGT
LOC_Os05g37330
Os.12360.1.S1_at--357--1211Chr05:21754327..21754351 (25 bp)
AGTTAGCATTATCTACTCTCACCGC
LOC_Os05g37330
Os.12360.1.S1_at--929--5251Chr05:21754422..21754446 (25 bp)
GAATCCTGGAAAACGCTCACGATGA
LOC_Os05g37330
Target Sequence 
CTGGAGTTCCTGCTCTCAGAACTGGAGGGCAAGGACATAACAGAAGTGATTGCTGCTGGAAGGGAGAAGTTTGCTTCTGT
GCCCTCAGGTGGTGGTGGTGGCATAGCTGTGGCAGCTCCTACAGCTGCAGGTGGCGGTGCAGCACCTGCTGAAGAGGCAA
AGAAAGAGGAGAAGGTCGAAGAGAAGGAAGAGTCTGATGATGACATGGGTTTCAGCTTGTTTGACTAAGTACCTTCGGCT
GCATATTTACCCCCGTTCACCCCAGTATCTTTCTGCATTGCTTGCTTTATCACTATGTGTGCAAAAATGAGCAATGTGAT
GGCTCTATGTGTTTCTGCTATTTTTTGGTCGAGACTGTATATGTCTAGTATCCTAAGAAGTTTAATGTAAAATTTCAGGG
AACTGGTCAAAACATGTAATGTTTGCTATCGTGAGTTAGCATTATCTACTCTCACCGCAATGTGCTCTGCTTTTTTTTGT
TTTATTTGGATGACGCTAAATTGGTTCGTCATCAATTAAATAACCCTAGAATCCTGGAAAACGCTCACGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis