Browse Element(s) Details


Os.53059.1.S1_x_at

Description gb:AK070640.1
DB_XREF= gi:32980664
TID=Os.53059.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061C10, full insert sequence.
FL= gb:AK070640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3735011/11HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g374107/11HhH-GPD superfamily base excision DNA repair protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37290NANA5+21738412..21740018retrotransposon protein, putative, unclassified
LOC_Os05g37300NANA5+21740665..21743972retrotransposon protein, putative, unclassified
LOC_Os05g37310OsAffx.24206.2.S1_s_at11/115+21746759..21747214hypothetical protein
LOC_Os05g37310OsAffx.24206.2.S1_at11/115+21746759..21747214hypothetical protein
LOC_Os05g37320OsAffx.20171.1.S1_at2/115+21748384..21751447transposon protein, putative, Mutator sub-class
LOC_Os05g37330Os.12360.1.S1_at11/115+21752238..2175449660s Acidic ribosomal protein, expressed
LOC_Os05g37340Os.15514.1.S1_at8/115+21756408..21759581expressed protein
LOC_Os05g37350OsAffx.14993.1.S1_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.53059.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350OsAffx.14993.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.26665.1.S1_x_at8/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37360OsAffx.27208.1.S1_at11/115+21774732..21775010hypothetical protein
LOC_Os05g37370NANA5+21781235..21781789retrotransposon protein, putative, unclassified
LOC_Os05g37380NANA5+21782334..21788489retrotransposon protein, putative, unclassified
LOC_Os05g37390Os.18982.1.S1_at11/115+21792752..21795268G10 protein homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006284biological_processbase-excision repair
GO:0006342biological_processchromatin silencing
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0003906molecular_functionDNA-(apurinic or apyrimidinic site) lyase activity
GO:0019104molecular_functionDNA N-glycosylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53059.1.S1_x_at--1135--8852Chr05:21809596..21809620 (25 bp)
TGATGGCATTGCTGGTCAGGACAAT
LOC_Os05g37410
Os.53059.1.S1_x_at--105--5992Chr05:21809543..21809567 (25 bp)
GAGACAGAGGCACATTTGAATTCTT
LOC_Os05g37410
Os.53059.1.S1_x_at--593--10391Chr05:21768991..21769015 (25 bp)
TTTTGAGTTCTCAATGGCCTGTGAG
LOC_Os05g37350
Os.53059.1.S1_x_at--607--391Chr05:21768886..21768910 (25 bp)
ATCAGCTGGAAGTCTTTGTGACCAC
LOC_Os05g37350
Os.53059.1.S1_x_at--355--2272Chr05:21809281..21809305 (25 bp)
AAATCTACATGCGACACAGTTCCAG
LOC_Os05g37410
Os.53059.1.S1_x_at--873--1092Chr05:21809235..21809259 (25 bp)
AGTGTTGTAACTTCAGAGTCAATTC
LOC_Os05g37410
Os.53059.1.S1_x_at--782--6092Chr05:21809220..21809244 (25 bp)
GAGTCAATTCTTCAACCAGGATTAC
LOC_Os05g37410
Os.53059.1.S1_x_at--369--1231Chr05:21768699..21768723 (25 bp)
AGTTCTGGGATGGATCATGCTCGTA
LOC_Os05g37350
Os.53059.1.S1_x_at--265--3592Chr05:21809149..21809173 (25 bp)
CATTAGTGACACAGCTTCTCAGCAG
LOC_Os05g37410
Os.53059.1.S1_x_at--236--8152Chr05:21809088..21809112 (25 bp)
GGAAATGATGTCACAGCCAATGAAA
LOC_Os05g37410
Os.53059.1.S1_x_at--378--6091Chr05:21768570..21768594 (25 bp)
GAGTACCATGGAATCAAAGCAGCAG
LOC_Os05g37350
Target Sequence 
TGATGGCATTGCTGGTCAGGACAATGAAGAAATCATTAGCACGAGTGCAGTAGGAGACAGAGGCACATTTGAATTCTTTT
ATAATGGGTCAAGACCAGATATAGGATTAAATTTTGAGTTCTCAATGGCCTGTGAGAAGATCCACATGGAACCAAAGGAC
AATACTACAGTTAATGAGTTAACTAAAGGTGAAAATTATTCTCTTCATTGCAAAGAATCAGCTGGAAGTCTTTGTGACCA
CGAGACAGAAATAGATCATAAAGCAAAATCAATATCAGATTTCTCTGCAGTAGAATTAACAGCATGTATGAAAAATCTAC
ATGCGACACAGTTCCAGAAGGAGATATCATTATCCCAAAGTGTTGTAACTTCAGAGTCAATTCTTCAACCAGGATTACTT
TTGAGTTCTGGGATGGATCATGCTCGTAGAAATTTTGTTGGTAGCATTAGTGACACAGCTTCTCAGCAGGTGGGAAGCAA
TTTTGATGATGGAAAATCATTAACAGGAAATGATGTCACAGCCAATGAAACTGAGTACCATGGAATCAAAGCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53059.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis