Browse Element(s) Details


OsAffx.14993.1.S1_x_at

Description tigr:9633.m03452
TID=OsAffx.14993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DEMETER protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3735011/11HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g3741010/11HhH-GPD superfamily base excision DNA repair protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37290NANA5+21738412..21740018retrotransposon protein, putative, unclassified
LOC_Os05g37300NANA5+21740665..21743972retrotransposon protein, putative, unclassified
LOC_Os05g37310OsAffx.24206.2.S1_s_at11/115+21746759..21747214hypothetical protein
LOC_Os05g37310OsAffx.24206.2.S1_at11/115+21746759..21747214hypothetical protein
LOC_Os05g37320OsAffx.20171.1.S1_at2/115+21748384..21751447transposon protein, putative, Mutator sub-class
LOC_Os05g37330Os.12360.1.S1_at11/115+21752238..2175449660s Acidic ribosomal protein, expressed
LOC_Os05g37340Os.15514.1.S1_at8/115+21756408..21759581expressed protein
LOC_Os05g37350OsAffx.14993.1.S1_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.53059.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350OsAffx.14993.1.S1_x_at11/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37350Os.26665.1.S1_x_at8/115+21760585..21773259HhH-GPD superfamily base excision DNA repair protein
LOC_Os05g37360OsAffx.27208.1.S1_at11/115+21774732..21775010hypothetical protein
LOC_Os05g37370NANA5+21781235..21781789retrotransposon protein, putative, unclassified
LOC_Os05g37380NANA5+21782334..21788489retrotransposon protein, putative, unclassified
LOC_Os05g37390Os.18982.1.S1_at11/115+21792752..21795268G10 protein homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006284biological_processbase-excision repair
GO:0006342biological_processchromatin silencing
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0003906molecular_functionDNA-(apurinic or apyrimidinic site) lyase activity
GO:0019104molecular_functionDNA N-glycosylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14993.1.S1_x_at--462--5052Chr05:21805754..21805778 (25 bp)
GCAGCTTCAATTCCTGTACCTAAAC
LOC_Os05g37410
OsAffx.14993.1.S1_x_at--781--2472Chr05:21805568..21805726 (25 bp)
AACACTATGTGTTCTGCTCGCAGTT
LOC_Os05g37410
OsAffx.14993.1.S1_x_at--422--3831Chr05:21763406..21763430 (25 bp)
CTGCTCGCAGTTACGAACTTCCAGA
LOC_Os05g37350
OsAffx.14993.1.S1_x_at--338--4252Chr05:21805256..21805280 (25 bp)
CCGTGCTGCAATCCTCAAACTGAAG
LOC_Os05g37410
OsAffx.14993.1.S1_x_at--239--7912Chr05:21804229..21804253 (25 bp)
GGTTCCTTGCCGAACAGCCATGAGA
LOC_Os05g37410
OsAffx.14993.1.S1_x_at--146--6152Chr05:21804206..21804230 (25 bp)
GAGGTAGTTTTCCACTTAATGGCAC
LOC_Os05g37410
OsAffx.14993.1.S1_x_at--679--6152Chr05:21804060..21804083 (24 bp)
GAGGTTTTTGCTGATCACAGTTCTA
LOC_Os05g37410
OsAffx.14993.1.S1_x_at--949--1212Chr05:21804042..21804066 (25 bp)
AGTTCTAGCCACAATCCCATAAATA
LOC_Os05g37410
OsAffx.14993.1.S1_x_at--235--8132Chr05:21803969..21803993 (25 bp)
GGACTTCAGTGCCAACCATATTCAA
LOC_Os05g37410
OsAffx.14993.1.S1_x_at--1013--332Chr05:21803849..21803871 (23 bp)
ATACAGCACTGCTTCTGGAGAGGAT
LOC_Os05g37410
OsAffx.14993.1.S1_x_at--96--5552Chr05:21803182..21803206 (25 bp)
GAAACTAGGGCACCAAGGCCTCTAT
LOC_Os05g37410
Target Sequence 
GCAGCTTCAATTCCTGTACCTAAACTAAAGAATGTGCATAGACTTCGGACAGAACACTATGTGTTCTGCTCGCAGTTACG
AACTTCCAGATTCACATCCCCTCATGCAACAGATGAACTAAAGGACACAAGGGAGGCACCAAAACCGTGCTGCAATCCTC
AAACTGAAGGTGGCTTATGCAGCAATGAGATGTGCCACAACTGTGTATCTGAACGAGAAAACCAATATAGATACGTCAGA
GGCACGGTTCTGGTTCCTTGCCGAACAGCCATGAGAGGTAGTTTTCCACTTAATGGCACTTACTTTCAAGTTAATGAGGT
TTTTGCTGATCACAGTTCTAGCCACAATCCCATAAATATCCCAAGGGAGCAGTTATGGAACTTGCATAGGCGTATGGTTT
ACTTTGGGACTTCAGTGCCAACCATATTCAAAGGTCTAACAACTGAAGAAATACAGCACTGCTTCTGGAGAGGATTTGTC
TGTGTGAGAGGATTCAACATGGAAACTAGGGCACCAAGGCCTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14993.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis